#+TITLE: Doom Emacs Literate Config
#+AUTHOR: Emmet

* Table of Contents :TOC:QUOTE:
#+BEGIN_QUOTE
- [[#what-is-doom-emacs][What is Doom Emacs?]]
- [[#configuration-for-doom-emacs][Configuration for Doom Emacs]]
- [[#my-configel][My config.el]]
  - [[#preamble--user-configuration][Preamble + User Configuration]]
  - [[#registers][Registers]]
  - [[#org-mode-configuration][Org Mode Configuration]]
  - [[#org-roam-configuration][Org Roam Configuration]]
  - [[#org-agenda-configuration][Org Agenda Configuration]]
  - [[#magit-configuration][Magit Configuration]]
  - [[#ibuffer-configuration][Ibuffer Configuration]]
  - [[#dired-configuration][Dired Configuration]]
  - [[#ranger-configuration][Ranger Configuration]]
  - [[#hledger-mode-configuration][hledger-mode Configuration]]
  - [[#no-tab-bar-configuration][NO Tab Bar Configuration]]
  - [[#focus-mode-configuration][Focus Mode Configuration]]
  - [[#helpful-mode-configuration][Helpful Mode Configuration]]
  - [[#mu4e-configuration][mu4e Configuration]]
  - [[#direnv][Direnv]]
  - [[#projectile][Projectile]]
  - [[#sudo-edit][sudo-edit]]
  - [[#lsp][LSP]]
  - [[#devdocs][DevDocs]]
  - [[#terminal][Terminal]]
  - [[#elfeed][Elfeed]]
- [[#my-initel][My init.el]]
- [[#my-packagesel][My packages.el]]
- [[#nix-integration][Nix Integration]]
#+END_QUOTE

* What is Doom Emacs?
[[https://github.com/doomemacs/doomemacs][Doom Emacs]] is a distribution of the [[https://www.gnu.org/software/emacs/][Emacs Text Editor]] designed for [[https://www.vim.org/][Vim]] users. I like to use Emacs due to its extensibility and extra features it is capable of (besides text editing). Some of these extra features include:
- [[https://orgmode.org/][Org Mode]] (Hierarchical text-based document format)
- [[https://www.orgroam.com/][Org Roam]] (A second brain / personal wiki)
- [[https://orgmode.org/][Org Agenda]] (Calendar and todo list)
- [[https://magit.vc/][Magit]] (Git Client)

I have found Emacs to be incredibly efficient, and transferring my workflow to fit inside of Emacs has allowed me to get much more work done.  I primarily use Emacs for writing, note-taking, task/project management and organizing information.

* Configuration for Doom Emacs
Doom Emacs is configured via 3 main files, written in Elisp, a dialect of the Lisp programming language designed for Emacs. These 3 main files are:
- [[./config.el][config.el]] - Stores your main configuration and allows to set user variables.
- [[./init.el][init.el]] - Allows quick downloads of groups of Emacs packages. These groups of Emacs packages are curated by the Doom Emacs developers.
- [[./packages.el][packages.el]] - Allows you to download additional packages from Melpa (Emacs package manager).

By storing your configuration in these 3 files, it allows for quick reproducible builds of Doom Emacs.

You can also load separate files inside of [[./config.el][config.el]] via the =load!= function, like so:

#+BEGIN_SRC emacs-lisp
(load! "~/.doom.d/private.el")
#+END_SRC

This can be used to load private config file with non-public information, or can be used to create modular configuration.

Doom Emacs is traditionally installed by cloning the repository ([[https://github.com/doomemacs/doomemacs][https://github.com/doomemacs/doomemacs]]) and running =./bin/doom install=.  I instead install Doom Emacs via Nix Doom Emacs ([[https://github.com/nix-community/nix-doom-emacs][https://github.com/nix-community/nix-doom-emacs]]), which packages Doom Emacs as a Nix derivation.  The advantage to this is that I get more reproducibility and the ability to rollback updates (if anything breaks), but the downside is that any time Emacs packages are changed/updated, the entire derivation must be rebuilt from scratch (this is often time-consuming).  I load this as a Nix derivation in my flake using the [[./doom.nix][doom.nix]] module.

* My config.el
** Preamble + User Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;; $DOOMDIR/config.el -*- lexical-binding: t; -*-

;;;------ User configuration ------;;;
(setq use-package-always-defer t)

;; Import relevant system variables from flake (see doom.nix)
;; includes variables like user-full-name, user-username, user-home-directory, user-email-address, doom-font,
;; and a few other custom variables I use later
(load! "~/.emacs.d/system-vars.el")
;; custom variables include:
;; dotfiles-dir, absolute path to home directory
;; user-default-roam-dir, name of default org-roam directory for the machine (relative to ~/Org)
;; system-nix-profile, profile selected from my dotfiles ("personal" "work" "wsl" etc...)
;; system-wm-type, wayland or x11? only should be considered if system-nix-profile is "personal" or "work"

;; I prefer visual lines
(setq display-line-numbers-type 'visual
      line-move-visual t)
(use-package-hook! evil
  :pre-init
  (setq evil-respect-visual-line-mode t) ;; sane j and k behavior
  t)

;; I also like evil mode visual movement
(map! :map evil-normal-state-map
      :desc "Move to next visual line"
      "j" 'evil-next-visual-line
      :desc "Move to previous visual line"
      "k" 'evil-previous-visual-line)

;; Theme
(setq custom-theme-directory "~/.emacs.d/themes")
(setq doom-theme 'doom-stylix)
;; +unicode-init-fonts-h often errors out
(remove-hook 'doom-init-ui-hook '+unicode-init-fonts-h)

;; Transparent background
(if (string= system-nix-profile "wsl")
  ;; Can't be that tranparent under wsl because no blur
  (funcall (lambda ()
    (set-frame-parameter nil 'alpha-background 98)
    (add-to-list 'default-frame-alist '(alpha-background . 98))
  ))
  ;; On Linux I can enable blur, however
  (funcall (lambda ()
    (set-frame-parameter nil 'alpha-background 85)
    (add-to-list 'default-frame-alist '(alpha-background . 85))
  ))
)

(add-to-list 'default-frame-alist '(inhibit-double-buffering . t))

;; Icons in completion buffers
(add-hook 'marginalia-mode-hook #'all-the-icons-completion-marginalia-setup)
(all-the-icons-completion-mode)

;; Grammar tasing should be voluntary
(setq writegood-mode nil)

;; Beacon shows where the cursor is, even when fast scrolling
(setq beacon-mode t)

(setq company-idle-delay 0.05)

;; Quicker window management keybindings
(bind-key* "C-j" #'evil-window-down)
(bind-key* "C-k" #'evil-window-up)
(bind-key* "C-h" #'evil-window-left)
(bind-key* "C-l" #'evil-window-right)
(bind-key* "C-q" #'evil-window-delete)
(bind-key* "M-q" #'kill-current-buffer)
(bind-key* "M-w" #'+workspace/close-window-or-workspace)
(bind-key* "M-n" #'next-buffer)
(bind-key* "M-p" #'previous-buffer)
(bind-key* "M-z" #'+vterm/toggle)
(bind-key* "M-e" #'+eshell/toggle)
(bind-key* (kbd "M-<return>") #'+vterm/here)
(bind-key* (kbd "M-E") #'+eshell/here)

;; Buffer management
(bind-key* "<mouse-9>" #'next-buffer)
(bind-key* "<mouse-8>" #'previous-buffer)

;; Disables custom.el
(setq custom-file null-device)

;; emacs-dashboard setup
(require 'all-the-icons)
(require 'dashboard)
(setq initial-buffer-choice (lambda () (get-buffer-create "*dashboard*"))
      doom-fallback-buffer-name "*dashboard*")
(setq image-scaling-factor 1)

;; emacs-dashboard variables
(setq dashboard-banner-logo-title "Welcome to Nix Doom Emacs")
(setq dashboard-startup-banner "~/.emacs.d/dashboard-logo.webp")
(setq dashboard-icon-type 'all-the-icons) ;; use `all-the-icons' package
(setq dashboard-set-heading-icons t)
(setq dashboard-set-file-icons t)
(setq dashboard-set-navigator t)
(setq dashboard-items '())
(setq dashboard-center-content t)
(setq dashboard-footer-messages '("Here to do customizing, or actual work?"
                                  "M-x insert-inspiring-message"
                                  "My software never has bugs. It just develops random features."
                                  "Dad, what are clouds made of? Linux servers, mostly."
                                  "There is no place like ~"
                                  "~ sweet ~"
                                  "sudo chown -R us ./allyourbase"
                                  "I’ll tell you a DNS joke but it could take 24 hours for everyone to get it."
                                  "I'd tell you a UDP joke, but you might not get it."
                                  "I'll tell you a TCP joke. Do you want to hear it?"))

;; Remove basic evil input and cursors from dashboard
(defun disable-cursor()
  (setq-local evil-normal-state-cursor '(bar . 0))
  (hl-line-mode -1)
)
(add-hook 'dashboard-mode-hook 'disable-cursor)
(evil-define-key 'normal dashboard-mode-map
  "j" 'evil-normal-state
  "k" 'evil-normal-state
  "h" 'evil-normal-state
  "l" 'evil-normal-state)
(setq dashboard-navigator-buttons
  `(;; line1
    ( (,"Roam" "" "" (lambda (&rest _)) 'org-formula)
     (,(all-the-icons-octicon "globe" :height 1.0 :v-adjust 0.0)
      "Notes overview" "" (lambda (&rest _) (org-roam-default-overview)) 'org-formula)
     (,(all-the-icons-fileicon "org" :height 1.0 :v-adjust 0.0)
      "Switch roam db" "" (lambda (&rest _) (org-roam-switch-db)) 'org-formula)
    )
    ;; line 2
    ( (,"Git" "" "" (lambda (&rest _)) 'diredfl-exec-priv)
     (,(all-the-icons-octicon "mark-github" :height 1.0 :v-adjust 0.0)
       "GitHub" "" (lambda (&rest _) (browse-url "https://github.com/librephoenix")) 'diredfl-exec-priv)
     (,(all-the-icons-faicon "gitlab" :height 1.0 :v-adjust 0.0)
       "GitLab" "" (lambda (&rest _) (browse-url "https://gitlab.com/librephoenix")) 'diredfl-exec-priv)
     (,(all-the-icons-faicon "coffee" :height 1.0 :v-adjust 0.0)
       "Gitea" "" (lambda (&rest _) (browse-url my-gitea-domain)) 'diredfl-exec-priv)
     (,(all-the-icons-octicon "triangle-up" :height 1.2 :v-adjust -0.1)
       "Codeberg" "" (lambda (&rest _) (browse-url "https://codeberg.org/librephoenix")) 'diredfl-exec-priv)
    )
    ;; line 3
    ( (,"Agenda" "" "" (lambda (&rest _)) 'dired-warning)
     (,(all-the-icons-octicon "checklist" :height 1.0 :v-adjust 0.0)
      "Agenda todos" "" (lambda (&rest _) (org-agenda-list)) 'dired-warning)
     (,(all-the-icons-octicon "calendar" :height 1.0 :v-adjust 0.0)
      "Agenda calendar" "" (lambda (&rest _) (cfw:open-org-calendar)) 'dired-warning)
    )
    ;; line 4
    ( (,"Config" "" "" (lambda (&rest _)) 'dired-mark)
     (,(all-the-icons-faicon "cogs" :height 1.0 :v-adjust 0.0)
      "System config" "" (lambda (&rest _) (projectile-switch-project-by-name "~/.dotfiles" t)) 'dired-mark)
     (,(all-the-icons-material "help" :height 1.0 :v-adjust -0.2)
      "Doom documentation" "" (lambda (&rest _) (doom/help)) 'dired-mark)
    )))

(setq dashboard-footer-icon
  (all-the-icons-faicon "list-alt"
    :height 1.0
    :v-adjust -0.15
    :face 'font-lock-keyword-face))
(dashboard-setup-startup-hook)

(map! :leader :desc "Open dashboard" "b b" #'dashboard-refresh-buffer)

(setq scroll-conservatively 101)

;; Smooth scrolling
;; requires good-scroll.el
;;(good-scroll-mode 1)
;;(setq good-scroll-duration 0.4
;;      good-scroll-step 270
;;      good-scroll-render-rate 0.03)
;;
;;(global-set-key (kbd "<next>") #'good-scroll-up-full-screen)
;;(global-set-key (kbd "<prior>") #'good-scroll-down-full-screen)

(setq scroll-margin 30)
(setq hscroll-margin 10)

;; Requires for faster loading
(require 'org-agenda)
(require 'dired)

;; Garbage collection to speed things up
(add-hook 'after-init-hook
          #'(lambda ()
              (setq gc-cons-threshold (* 100 1024 1024))))
(add-hook 'focus-out-hook 'garbage-collect)
(run-with-idle-timer 5 t 'garbage-collect)

;; Enable autorevert globally so that buffers update when files change on disk.
;; Very useful when used with file syncing (i.e. syncthing)
(setq global-auto-revert-mode nil)
(setq auto-revert-use-notify t)

;; Neotree fun
(defun neotree-snipe-dir ()
  (interactive)
  (if (projectile-project-root)
    (neotree-dir (projectile-project-root))
    (neotree-dir (file-name-directory (file-truename (buffer-name))))
  )
)

(map! :leader :desc "Open neotree here" "o n" #'neotree-snipe-dir
              :desc "Hide neotree" "o N" #'neotree-hide)

;; For camelCase
(global-subword-mode 1)

;; ripgrep as grep
(setq grep-command "rg -nS --no-heading "
      grep-use-null-device nil)

;; Mini-frames ;; cool but kinda suboptimal atm
;(add-load-path! "~/.emacs.d/mini-frame")
;(require 'mini-frame)
;(setq mini-frame-ignore-commands '(evil-ex-search-forward helpful-variable helpful-callable))
;(setq mini-frame-show-parameters
;    '((left . 216)
;     (top . 240)
;     (width . 0.78)
;     (height . 20)
;     (alpha-background . 90))
;)
;(setq mini-frame-detach-on-hide nil)
;(setq mini-frame-resize t)
;(setq resize-mini-frames t)
;(setq mini-frame-standalone nil)
;(mini-frame-mode 1)

#+END_SRC
** Registers
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ Registers ------;;;

(map! :leader
      :desc "Jump to register"
      "r" 'jump-to-register)

(if (string= system-nix-profile "personal") (set-register ?f (cons 'file (concat user-home-directory "/Org/Family.s/Notes/hledger.org"))))
(set-register ?h (cons 'file user-home-directory))
(set-register ?r (cons 'file (concat dotfiles-dir "/README.org")))

#+END_SRC
** Org Mode Configuration
*** Standard Org Mode Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ Org mode configuration ------;;;

;; Set default org directory
(setq org-directory "~/Org")
(setq org-attach-directory "~/Org/.attach")
(setq org-attach-id-dir "~/Org/.attach")
(setq org-id-locations-file "~/Org/.orgids")
(setq org-cycle-include-plain-lists 'integrate)

(remove-hook 'after-save-hook #'+literate|recompile-maybe)
(set-company-backend! 'org-mode nil)

;; Automatically show images but manually control their size
(setq org-startup-with-inline-images t
      org-image-actual-width nil)

(require 'evil-org)
(require 'evil-org-agenda)
(add-hook 'org-mode-hook 'evil-org-mode -100)

;; Top-level headings should be bigger!
(custom-set-faces!
  `(outline-1 :height 1.3 :foreground ,(nth 1 (nth 14 doom-themes--colors)))
  `(outline-2 :height 1.25 :foreground ,(nth 1 (nth 15 doom-themes--colors)))
  `(outline-3 :height 1.2 :foreground ,(nth 1 (nth 19 doom-themes--colors)))
  `(outline-4 :height 1.1 :foreground ,(nth 1 (nth 23 doom-themes--colors)))
  `(outline-5 :height 1.1 :foreground ,(nth 1 (nth 24 doom-themes--colors)))
  `(outline-6 :height 1.1 :foreground ,(nth 1 (nth 16 doom-themes--colors)))
  `(outline-7 :height 1.05 :foreground ,(nth 1 (nth 18 doom-themes--colors)))
  `(outline-8 :height 1.05 :foreground ,(nth 1 (nth 11 doom-themes--colors)))
  '(variable-pitch :family "Intel One Mono")
  `(org-agenda-date :inherit 'unspecified :foreground ,(nth 1 (nth 19 doom-themes--colors)) :weight bold :height 1.1)
  `(org-agenda-date-today :inherit 'unspecified :foreground ,(nth 1 (nth 15 doom-themes--colors)) :weight bold :height 1.1)
  `(org-agenda-date-weekend :inherit 'unspecified :foreground ,(nth 1 (nth 24 doom-themes--colors)) :weight bold :height 1.1)
  `(org-agenda-date-weekend-today :inherit 'unspecified :foreground ,(nth 1 (nth 15 doom-themes--colors)) :weight bold :height 1.1)
)

(after! org (org-eldoc-load))

(with-eval-after-load 'org (global-org-modern-mode))

;; Add frame borders and window dividers
(modify-all-frames-parameters
 '((right-divider-width . 5)
   (internal-border-width . 5)))
(dolist (face '(window-divider
                window-divider-first-pixel
                window-divider-last-pixel))
  (face-spec-reset-face face)
  (set-face-foreground face (face-attribute 'default :background)))
(set-face-background 'fringe (face-attribute 'default :background))

(setq
  ;; Edit settings
  org-auto-align-tags nil
  org-tags-column 0
  org-catch-invisible-edits 'show-and-error
  org-special-ctrl-a/e t
  org-insert-heading-respect-content t

  ;; Org styling, hide markup etc.
  org-hide-emphasis-markers t
  org-pretty-entities t
  org-ellipsis "…")

(setq-default line-spacing 0)

; Automatic table of contents is nice
(if (require 'toc-org nil t)
    (progn
      (add-hook 'org-mode-hook 'toc-org-mode)
      (add-hook 'markdown-mode-hook 'toc-org-mode))
  (warn "toc-org not found"))

;;---- this block from http://fgiasson.com/blog/index.php/2016/06/21/optimal-emacs-settings-for-org-mode-for-literate-programming/ ----;;
;; Tangle Org files when we save them
(defun tangle-on-save-org-mode-file()
  (when (string= (message "%s" major-mode) "org-mode")
    (org-babel-tangle)))

(add-hook 'after-save-hook 'tangle-on-save-org-mode-file)
;; ---- end block ---- ;;

;; Better org table editing
;; This breaks multiline visual block edits
;;(setq-default evil-insert-state-exit-hook '(org-update-parent-todo-statistics
;; t))
;;(setq org-table-automatic-realign nil)

;; Better for org source blocks
(setq electric-indent-mode nil)
(setq org-src-window-setup 'current-window)
(set-popup-rule! "^\\*Org Src"
  :side 'top'
  :size 0.9)

;; Horizontal scrolling tables
(add-load-path! "~/.emacs.d/phscroll")
(setq org-startup-truncated nil)
(with-eval-after-load "org"
  (require 'org-phscroll))
(setq phscroll-calculate-in-pixels t)

;; Org side tree outline
(add-load-path! "~/.emacs.d/org-side-tree")
(require 'org-side-tree)
(setq org-side-tree-persistent nil)
(setq org-side-tree-fontify t)
(setq org-side-tree-enable-folding t)
(defun org-side-tree-create-or-toggle ()
  (interactive)
  (if (or (org-side-tree-has-tree-p) (eq major-mode 'org-side-tree-mode))
      (org-side-tree-toggle)
      (org-side-tree)))
(map! :leader
      "O t" #'org-side-tree-create-or-toggle)
(map! :map org-side-tree-mode-map
      "SPC" nil)

#+END_SRC

*** Org Download and Image Capture
#+BEGIN_SRC emacs-lisp :tangle config.el
(require 'org-download)

;; Drag-and-drop to `dired`
(add-hook 'dired-mode-hook 'org-download-enable)

;; system-wm-type, wayland or x11? only should be considered if system-nix-profile is "personal" or "work"
(if (string= system-wm-type "wayland")
  (setq org-download-screenshot-method "grim -g \"$(slurp)\" %s")
  (setq org-download-screenshot-method "flameshot gui -p %s")
)

(after! org-download
   (setq org-download-method 'directory))

(after! org
  (setq-default org-download-image-dir "img/"
        org-download-heading-lvl nil))

(add-to-list 'display-buffer-alist '("^*Async Shell Command*" . (display-buffer-no-window)))

(defun org-download-clipboard-basename ()
  (interactive)
  (setq org-download-path-last-dir org-download-image-dir)
  (setq org-download-image-dir (completing-read "directory: " (-filter #'f-directory-p (directory-files-recursively "." "" t)) nil t))
  (org-download-clipboard (completing-read "basename: " '() nil nil))
  (setq org-download-image-dir org-download-path-last-dir)
)

(map! :leader
      :desc "Insert a screenshot"
      "i s" 'org-download-screenshot
      :desc "Insert image from clipboard"
      "i p" 'org-download-clipboard
      "i P" 'org-download-clipboard-basename)

#+END_SRC
*** External Program File Management
#+BEGIN_SRC emacs-lisp :tangle config.el
(defun org-new-file-from-template()
  "Copy a template from ~/Templates into a time stamped unique-named file in the
same directory as the org-buffer and insert a link to this file."
  (interactive)
  (setq template-file (completing-read "Template file:" (directory-files "~/Templates")))
  (setq filename
        (concat
         (make-temp-name
          (concat (file-name-directory (buffer-file-name))
                  "files/"
                  (file-name-nondirectory (buffer-file-name))
                  "_"
                  (format-time-string "%Y%m%d_%H%M%S_")) ) (file-name-extension template-file t)))
  (copy-file (concat user-home-directory "/Templates/" template-file) filename)
  (setq prettyname (read-from-minibuffer "Pretty name:"))
  (insert (concat "[[./files/" (file-name-nondirectory filename) "][" prettyname "]]"))
  (org-display-inline-images))

(map! :leader
      :desc "Create a new file from a template and insert a link at point"
      "i t" 'my-org-new-file-from-template)

(if (not (string= system-nix-profile "wsl"))
  (when (require 'openwith nil 'noerror)
     (setq openwith-associations
           (list
           (list (openwith-make-extension-regexp
                  '("mpg" "mpeg" "mp3" "mp4"
                    "avi" "wmv" "wav" "mov" "flv"
                    "ogm" "ogg" "mkv"))
                    "mpv"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("doc" "xls" "ppt" "odt" "ods" "odg" "odp"))
                    "libreoffice"
                    '(file))
               '("\\.lyx" "lyx" (file))
               '("\\.chm" "kchmviewer" (file))
           (list (openwith-make-extension-regexp
                  '("pdf" "ps" "ps.gz" "dvi"))
                    "atril"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("kdenlive"))
                    "kdenlive-accel"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("kra"))
                    "krita"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("blend" "blend1"))
                    "blender"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("helio"))
                    "helio"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("svg"))
                    "inkscape"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("flp"))
                    "flstudio"
                    '(file))
           (list (openwith-make-extension-regexp
                  '("mid"))
                    "rosegarden"
                    '(file))
               ))
     (openwith-mode 1)))

(add-load-path! "~/.emacs.d/org-krita")
(require 'org-krita)
(add-hook 'org-mode-hook 'org-krita-mode)
(setq org-krita-extract-filename "preview.png")
(setq org-krita-scale 1)

(add-load-path! "~/.emacs.d/org-xournalpp")
(require 'org-xournalpp)
(add-hook 'org-mode-hook 'org-xournalpp-mode)
(setq org-xournalpp-template-getter
  '(closure
    (t)
    nil
    (file-truename "~/Templates/template.xopp") ; use my own template
  )
)

;; override width to static 250 for now
;; so I don't have massive images in org mode (scrolling not fun)
(defun org-xournalpp--create-image (link refresh)
  "Extract svg/png from given LINK and return image.

Regenerate the cached inline image, if REFRESH is true.

If the path from LINK does not exist, nil is returned."
  (let ((width 250)
        (xopp-path (f-expand (org-element-property :path link))))
    (when (f-exists? xopp-path)
        (if width
            (create-image (org-xournalpp--get-image xopp-path refresh)
                          org-xournalpp-image-type
                          nil
                          :width width)
          (create-image (org-xournalpp--get-image xopp-path refresh)
                        org-xournalpp-image-type
                        nil)))))


#+END_SRC
*** Copy Links/Files into Clipboard
#+BEGIN_SRC emacs-lisp :tangle config.el
(defun org-copy-link-to-clipboard-at-point ()
  "Copy current link at point into clipboard (useful for images and links)"
  ;; Remember to press C-g to kill this foreground process if it hangs!
  (interactive)
  (if (eq major-mode #'org-mode)
      (link-hint-copy-link-at-point)
  )
  (if (eq major-mode #'ranger-mode)
      (ranger-copy-absolute-file-paths)
  )
  (if (eq major-mode #'image-mode)
      (image-mode-copy-file-name-as-kill)
  )
  (shell-command "~/.emacs.d/scripts/copy-link-or-file/copy-link-or-file-to-clipboard.sh " nil nil)
)

(if (string= system-nix-profile "wsl")
    (map! :leader
          :desc "Copy link at point"
          "y y" 'link-hint-copy-link-at-point)
    (map! :leader
          :desc "Copy link/file at point into system clipbord (C-g to escape if copying a file)"
          "y y" 'org-copy-link-to-clipboard-at-point))

#+END_SRC
**** Copy Link/File to Clipboard Helper Script
Shamelessly stolen from [[https://unix.stackexchange.com/questions/30093/copy-image-from-command-line-to-clipboard][here]] and modified for my use.
#+BEGIN_SRC shell :tangle ./scripts/copy-link-or-file/copy-link-or-file-to-clipboard.sh :tangle-mode (identity #o755)
#!/bin/sh
if [ $(echo $XDG_SESSION_TYPE) == "wayland" ]; then
  FILENAME="$(wl-paste)"
  FILTEREDFILENAME=$(echo "$FILENAME" | sed "s+file:+./+")
  echo "$FILTEREDFILENAME"
  if [[ -f "$FILTEREDFILENAME" ]]; then
    wl-copy < "$FILTEREDFILENAME"
  fi
elif [ $(echo $XDG_SESSION_TYPE) == "x11" ]; then
  FILENAME="$(xclip -o)"
  FILTEREDFILENAME=$(echo "$FILENAME" | sed "s+file:+./+")
  if [[ -f "$FILTEREDFILENAME" ]]; then
    TYPE=$(file -b --mime-type "$FILTEREDFILENAME")
    xclip -selection clipboard -t "$TYPE" -i "$FILTEREDFILENAME"
    exit
  fi
else
  exit
fi
exit
#+END_SRC
*** NO Org Sliced Images
#+begin_src emacs-lisp
;; this is kinda buggy
(add-load-path! "~/.emacs.d/org-sliced-images")
(require 'org-sliced-images)
(defalias 'org-remove-inline-images #'org-sliced-images-remove-inline-images)
(defalias 'org-toggle-inline-images #'org-sliced-images-toggle-inline-images)
(defalias 'org-display-inline-images #'org-sliced-images-display-inline-images)
#+end_src
*** Org Online Images
#+BEGIN_SRC emacs-lisp :tangle config.el
;; Online images inside of org mode is pretty cool
;; This snippit is from Tobias on Stack Exchange
;; https://emacs.stackexchange.com/questions/42281/org-mode-is-it-possible-to-display-online-images
(require 'org-yt)

(defun org-image-link (protocol link _description)
  "Interpret LINK as base64-encoded image data."
  (cl-assert (string-match "\\`img" protocol) nil
             "Expected protocol type starting with img")
  (let ((buf (url-retrieve-synchronously (concat (substring protocol 3) ":" link))))
    (cl-assert buf nil
               "Download of image \"%s\" failed." link)
    (with-current-buffer buf
      (goto-char (point-min))
      (re-search-forward "\r?\n\r?\n")
      (buffer-substring-no-properties (point) (point-max)))))

(org-link-set-parameters
 "imghttp"
 :image-data-fun #'org-image-link)

(org-link-set-parameters
 "imghttps"
 :image-data-fun #'org-image-link)
#+END_SRC
*** Org Mermaid Diagrams
#+BEGIN_SRC emacs-lisp :tangle config.el
;; Mermaid diagrams
(setq ob-mermaid-cli-path "~/.nix-profile/bin/mmdc")
#+END_SRC
*** Org Simple Printing
#+BEGIN_SRC emacs-lisp :tangle config.el
;; Print org mode
(defun org-simple-print-buffer ()
  "Open an htmlized form of current buffer and open in a web browser to print"
  (interactive)
  (htmlize-buffer)
  (browse-url-of-buffer (concat (buffer-name) ".html"))
  (sleep-for 1)
  (kill-buffer (concat (buffer-name) ".html")))

;; Doesn't work yet, bc htmlize-region takes arguments BEG and END
;(defun org-simple-print-region()
;  "Open an htmlized form of current region and open in a web browser to print"
;  (interactive)
;  (htmlize-region )
;  (browse-url-of-buffer (concat (buffer-name) ".html"))
;  (sleep-for 1)
;  (kill-buffer (concat (buffer-name) ".html")))

(map! :leader
      :prefix ("P" . "Print")
      :desc "Simple print buffer in web browser"
      "p" 'org-simple-print-buffer)

(map! :leader
      :prefix ("P" . "Print")
      :desc "Simple print buffer in web browser"
      "b" 'org-simple-print-buffer)

;(map! :leader
;      :prefix ("P" . "Print")
;      :desc "Simple print region in web browser"
;      "r" 'org-simple-print-region)

#+END_SRC
*** Org Inline Macros
#+BEGIN_SRC emacs-lisp :tangle config.el
;; Display macros inline in buffers
(add-to-list 'font-lock-extra-managed-props 'display)

(font-lock-add-keywords
 'org-mode
 '(("\\({{{[a-zA-Z#%)(_-+0-9]+}}}\\)" 0
    `(face nil display
           ,(format "%s"
                    (let* ((input-str (match-string 0))
                          (el (with-temp-buffer
                                (insert input-str)
                                (goto-char (point-min))
                                (org-element-context)))
                          (text (org-macro-expand el org-macro-templates)))
                      (if text
                          text
                        input-str)))))))

#+END_SRC
*** Org Transclusion
#+BEGIN_SRC emacs-lisp :tangle config.el
;; Org transclusion
(require 'org-transclusion)
(after! org
  (map! :map global-map "<f12>" #'org-transclusion-add :leader :prefix "n" :desc "Org Transclusion Mode" "t" #'org-transclusion-mode)
  (map! :leader :prefix "n" "l" #'org-transclusion-live-sync-start)
  (setq org-transclusion-exclude-elements '(property-drawer keyword))
  (add-hook 'org-mode-hook #'org-transclusion-mode)
)

#+END_SRC
*** Org Jekyll
#+begin_src emacs-lisp :tangle config.el
(defun org-jekyll-new-post ()
  (interactive)
  (setq new-blog-post-title (read-from-minibuffer "Post name: "))
  (setq new-blog-post-date (format-time-string "%Y-%m-%d" (date-to-time (org-read-date))))
  (setq new-blog-post-slug (downcase (replace-regexp-in-string "[^[:alpha:][:digit:]_-]" "" (string-replace " " "-" new-blog-post-title))))
  (setq new-blog-post-file (concat (projectile-project-root) "org/_posts/"  new-blog-post-date "-" new-blog-post-slug ".org"))
  (let ((org-capture-templates
        `(("p" "New Jekyll blog post" plain (file new-blog-post-file)
           ,(concat "#+title: " new-blog-post-title "\n#+options: toc:nil num:nil\n#+begin_export html\n---\nlayout: post\ntitle: " new-blog-post-title "\nexcerpt: %?\ntags: \npermalink: " new-blog-post-date "-" new-blog-post-slug "\n---\n#+end_export\n\n#+attr_html: :alt " new-blog-post-title " :align center\n[[../assets/" new-blog-post-date "-" new-blog-post-slug ".png]]")))
   )) (org-capture))
)

(defun org-jekyll-rename-post ()
  (interactive)
  (setq new-blog-post-title (read-from-minibuffer "Post name: "))
  (setq new-blog-post-date (format-time-string "%Y-%m-%d" (date-to-time (org-read-date))))
  (setq new-blog-post-slug (downcase (replace-regexp-in-string "[^[:alpha:][:digit:]_-]" "" (string-replace " " "-" new-blog-post-title))))
  (org-roam-set-keyword "title" new-blog-post-title)
  (replace-regexp "permalink: .*\n" (concat "permalink: " new-blog-post-date "-" new-blog-post-slug "\n") nil (point-min) (point-max))
  (replace-regexp "title: .*\n" (concat "title: " new-blog-post-title "\n") nil (point-min) (point-max))
  (setq prev-blog-post-filename-base (file-name-base (buffer-file-name)))
  (doom/move-this-file (concat new-blog-post-date "-" new-blog-post-slug ".org"))
  (shell-command (concat "sed -i s/" prev-blog-post-filename-base "/" (file-name-base (buffer-file-name)) "/g *.org") nil)
  (replace-regexp prev-blog-post-filename-base (file-name-base (buffer-file-name)) nil (point-min) (point-max))
  (save-buffer)
)

(map! :leader
      :prefix ("N")

      :desc "New blog post"
      "p" #'org-jekyll-new-post

      :desc "Rename or redate blog post and update links accordingly"
      "e" #'org-jekyll-rename-post
)

#+end_src
*** Crdt
#+begin_src emacs-lisp :tangle config.el
(require 'crdt)
(setq crdt-default-tls t)
(setq crdt-use-stunnel t)
(setq crdt-default-name "Emmet")
(if (file-exists-p "~/.emacs.d/crdt-private.el") (load! "~/.emacs.d/crdt-private.el"))
(defun crdt-connect-default ()
  (interactive)
  (crdt-connect crdt-default-server-address crdt-default-name)
)
(map! :leader
      :desc "crdt"
      :prefix ("C")

      :desc "Connect to a crdt server"
      "c" #'crdt-connect-default

      :desc "Connect to default crdt server"
      "C" #'crdt-connect-default

      :desc "Disconnect from a crdt server"
      "d" #'crdt-disconnect

      :desc "Add buffer to a session"
      "a" #'crdt-share-buffer

      :desc "Stop sharing buffer when running a server"
      "s" #'crdt-stop-share-buffer

      :desc "Run M-x on the (remote) crdt session"
      "x" #'crdt-M-x

      :desc "List crdt buffers in a session"
      "l" #'crdt-list-buffers

      :desc "List crdt users in a session"
      "u" #'crdt-list-users
)

#+end_src
*** Org Analyzer
#+begin_src emacs-lisp :tangle config.el
(require 'org-analyzer)
(setq org-analyzer-wrapper-command "org-analyzer")
(setq org-analyzer-jar-file-name "~/.nix-profile/bin/org-analyzer.jar")
(setq org-analyzer-java-program "~/.nix-profile/bin/org-analyzer") ;; Is not actually java, buta  wrapper shell script

(defun org-analyzer-start-process (org-dir)
  "Start the org analyzer process .
Argument ORG-DIR is where the org-files are located."
  (org-analyzer-cleanup-process-state)
  (unless (file-exists-p org-dir)
    (warn "org-analyzer was started with org-directory set to
  \"%s\"\nbut this directory does not exist.
Please set the variable `org-directory' to the location where you keep your org files."
           org-directory))
    (let* ((name (format " *org-analyzer [org-dir:%s]*" org-dir))
           (proc-buffer (generate-new-buffer name))
           (proc nil))
      (setq org-analyzer-process-buffer proc-buffer)
      (with-current-buffer proc-buffer
        (setq default-directory (if (file-exists-p org-dir)
                                    org-dir default-directory)
              proc (condition-case err
                       (let ((process-connection-type nil)
                             (process-environment process-environment))
                         (start-process name
                                        (current-buffer)
                                        org-analyzer-wrapper-command
                                        "--port"
                                        (format "%d" org-analyzer-http-port)
                                        "--started-from-emacs"
                      (if (file-exists-p org-dir) org-dir "")))
                     (error
                      (concat "Can't start org-analyzer (%s: %s)"
                (car err) (cadr err)))))
        (set-process-query-on-exit-flag proc nil)
        (set-process-filter proc #'org-analyzer-process-filter))
      proc-buffer))

#+end_src
** Org Roam Configuration
*** Standard Org Roam Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ Org roam configuration ------;;;
(require 'org-roam)
(require 'org-roam-dailies)

(setq org-roam-directory (concat "~/Org/" user-default-roam-dir "/Notes")
      org-roam-db-location (concat "~/Org/" user-default-roam-dir "/Notes/org-roam.db"))

(setq org-roam-node-display-template
      "${title:65}📝${tags:*}")

(org-roam-db-autosync-mode)

(setq mode-line-misc-info '((which-function-mode
  (which-func-mode
   ("" which-func-format " ")))
 ("" so-long-mode-line-info)
 (global-mode-string
  ("" global-mode-string))
 " "
 org-roam-db-choice)
)

(setq org-roam-list-files-commands '(rg))

#+END_SRC
*** Multi Org Roam Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
(setq full-org-roam-db-list nil)

(setq full-org-roam-db-list (directory-files "~/Org" t "\\.[p,s]$"))
(dolist (item full-org-roam-db-list)
  (setq full-org-roam-db-list
        (append (directory-files item t "\\.[p,s]$") full-org-roam-db-list)))

(setq org-roam-db-choice user-default-roam-dir)
(setq full-org-roam-db-list-pretty (list))
(dolist (item full-org-roam-db-list)
  (setq full-org-roam-db-list-pretty
       (append (list
             (replace-regexp-in-string (concat "\\/home\\/" user-username "\\/Org\\/") "" item)) full-org-roam-db-list-pretty)))

(defun org-roam-open-dashboard ()
  "Open ${org-roam-directory}/dashboard.org (I use this naming convention to create dashboards for each of my org roam maps)"
  (interactive)
  (if (org-roam-node-from-title-or-alias "Overview")
      (org-roam-node-open (org-roam-node-from-title-or-alias "Overview"))
      (dired org-roam-directory))
)

(defun org-roam-open-inbox ()
  "Open ${org-roam-directory}/dashboard.org (I use this naming convention to create dashboards for each of my org roam maps)"
  (interactive)
  (if (org-roam-node-from-title-or-alias "Inbox")
      (org-roam-node-open (org-roam-node-from-title-or-alias "Inbox"))
      (message "No inbox found, capture something with M-x org-roam-capture-inbox"))
)

(defun org-roam-capture-inbox ()
  (interactive)
  (org-roam-capture- :node (org-roam-node-from-title-or-alias "Inbox")
                     :templates '(("i" "inbox" plain "* %?"
                                  :if-new (file+head "%<%Y%m%d%H%M%S>-inbox.org" "#+title: Inbox\n")))))

(defun org-roam-switch-db (&optional arg silent)
  "Switch to a different org-roam database, arg"
  (interactive)
  (when (not arg)
  (setq full-org-roam-db-list nil)

  (setq full-org-roam-db-list (directory-files "~/Org" t "\\.[p,s]$"))
  (dolist (item full-org-roam-db-list)
    (setq full-org-roam-db-list
        (append (directory-files item t "\\.[p,s]$") full-org-roam-db-list)))

  (setq full-org-roam-db-list-pretty (list))
  (dolist (item full-org-roam-db-list)
    (setq full-org-roam-db-list-pretty
        (append (list
                 (replace-regexp-in-string (concat "\\/home\\/" user-username "\\/Org\\/") "" item)) full-org-roam-db-list-pretty)))

  (setq org-roam-db-choice (completing-read "Select org roam database: "
                          full-org-roam-db-list-pretty nil t)))
  (when arg
    (setq org-roam-db-choice arg))

      (setq org-roam-directory (file-truename (concat "~/Org/" org-roam-db-choice "/Notes"))
            org-roam-db-location (file-truename (concat "~/Org/" org-roam-db-choice "/Notes/org-roam.db"))
            org-directory (file-truename (concat "~/Org/" org-roam-db-choice "/Notes")))
  (when (not silent)
  (org-roam-open-dashboard))

  (org-roam-db-sync)

  (message (concat "Switched to " org-roam-db-choice " org-roam database!")))

(defun org-roam-default-overview ()
  (interactive)
  (org-roam-switch-db user-default-roam-dir))

(defun org-roam-switch-db-id-open (arg ID &optional switchpersist)
  "Switch to another org-roam db and visit file with id arg"
  "If switchpersist is non-nil, stay in the new org-roam db after visiting file"
  (interactive)
  (setq prev-org-roam-db-choice org-roam-db-choice)
  (org-roam-switch-db arg 1)
  (org-roam-id-open ID)
  (when (not switchpersist)
    (org-roam-switch-db prev-org-roam-db-choice 1)))

#+END_SRC

#+RESULTS:
: org-roam-switch-db-id-open

*** Org Roam "todos" Tagging for Org Agenda
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ Org-roam-agenda configuration ------;;;
(defun text-in-buffer-p (TEXT)
(save-excursion (goto-char (point-min)) (search-forward TEXT nil t)))

(defun apply-old-todos-tag-maybe (&optional FILE)
   (interactive)
   (if (stringp FILE)
   (setq the-daily-node-filename FILE)
   (setq the-daily-node-filename buffer-file-name))
   (if (org-roam-dailies--daily-note-p the-daily-node-filename)
    (if (<= (nth 2 (org-roam-dailies-calendar--file-to-date the-daily-node-filename)) (nth 2 org-agenda-current-date))
      (if (<= (nth 1 (org-roam-dailies-calendar--file-to-date the-daily-node-filename)) (nth 1 org-agenda-current-date))
        (if (<= (nth 0 (org-roam-dailies-calendar--file-to-date the-daily-node-filename)) (nth 0 org-agenda-current-date))
          (funcall (lambda ()
            (with-current-buffer (get-file-buffer the-daily-node-filename) (org-roam-tag-add '("old-todos")))
            (with-current-buffer (get-file-buffer the-daily-node-filename) (org-roam-tag-remove '("todos")))
            )
          )
        )
      )
    )
  )
)

(defun apply-old-todos-tag-maybe-and-save (FILE)
  (interactive)
  (find-file-noselect FILE)
  (apply-old-todos-tag-maybe FILE)
  (with-current-buffer (get-file-buffer the-daily-node-filename) (save-buffer))
  (with-current-buffer (get-file-buffer the-daily-node-filename) (kill-buffer))
)

(defun org-current-buffer-has-todos ()
  "Return non-nil if current buffer has any todo entry."

  (org-element-map                          ; (2)
       (org-element-parse-buffer 'headline) ; (1)
       'headline
     (lambda (h)
       (eq (org-element-property :todo-type h)
           'todo))
     nil 'first-match))                     ; (3)

(defun org-has-recent-timestamps (OLD-DAYS)
  "Return non-nil only if current buffer has entries with timestamps
   more recent than OLD-DAYS days"
  (interactive)
  (if (org-element-map (org-element-parse-buffer) 'timestamp
    (lambda (h)
      (org-element-property :raw-value h)))
      (org-element-map                          ; (2)
         (org-element-parse-buffer) ; (1)
          'timestamp
         (lambda (h)
           (time-less-p (time-subtract (current-time) (* 60 60 24 OLD-DAYS)) (date-to-time (org-element-property :raw-value h))))
         nil 'first-match) nil))

(setq org-timestamps-days-for-old 21)

; This has a bug where it won't sync a new agenda file
; if I'm editing an org roam node file while set to another
; org roam db
(defun add-todos-tag-on-save-org-mode-file()
  (interactive)
  (when (string= (message "%s" major-mode) "org-mode")
    (if (org-roam-node-p (org-roam-node-at-point))
    (funcall (lambda()
      (if (or (org-current-buffer-has-todos) (org-has-recent-timestamps org-timestamps-days-for-old))
        (org-roam-tag-add '("todos"))
        (org-roam-tag-remove '("todos"))
      )
      (apply-old-todos-tag-maybe)
     )
    )
  )
 )
)

(add-hook 'before-save-hook 'add-todos-tag-on-save-org-mode-file)

#+END_SRC
*** Setup Org Agenda from Org Roam
#+BEGIN_SRC emacs-lisp :tangle config.el
(defun org-roam-filter-by-tag (tag-name)
  (lambda (node)
    (member tag-name (org-roam-node-tags node))))

(defun org-roam-list-notes-by-tag (tag-name)
  (mapcar #'org-roam-node-file
          (seq-filter
           (org-roam-filter-by-tag tag-name)
           (org-roam-node-list))))

(defun org-roam-dailies-apply-old-todos-tags-to-all ()
;  (dolist (daily-node org-roam-dailies-files)
;           (apply-old-todos-tag-maybe-and-save daily-node)
;  )
  (setq num 0)
  (while (< num (list-length (org-roam-list-notes-by-tag "todos")))
    (apply-old-todos-tag-maybe-and-save (nth num (org-roam-list-notes-by-tag "todos")))
  (setq num (1+ num))
  )
)

;; Refreshing org roam agenda
(defun org-roam-refresh-agenda-list ()
  (interactive)
  (setq prev-org-roam-db-choice org-roam-db-choice)
  (setq org-agenda-files '())
  (setq org-id-files '())
  (setq org-roam-directory (file-truename "~/Org")
        org-roam-db-location (file-truename "~/Org/org-roam.db")
        org-directory (file-truename "~/Org/"))
  (org-roam-db-sync)
  (setq org-agenda-files (org-roam-list-notes-by-tag "todos"))
  (setq org-id-files (org-roam-list-files))
  (setq org-agenda-files (-uniq org-agenda-files))
  (org-roam-switch-db prev-org-roam-db-choice 1)
)

;; Build agenda only when org agenda first opened for session
(setq org-roam-agenda-initialized nil)
(defun org-roam-refresh-agenda-list-init ()
  (if (not org-roam-agenda-initialized)
    (funcall
      (lambda ()
        (org-roam-refresh-agenda-list)
        (setq org-roam-agenda-initialized t)
      )
    )
  )
)
(add-hook 'org-agenda-mode-hook 'org-roam-refresh-agenda-list-init)

(map! :leader
      :prefix ("o a")

      :desc "Refresh org agenda from roam dbs"
      "r" 'org-roam-refresh-agenda-list)

#+END_SRC
*** Org Roam Keybindings
#+BEGIN_SRC emacs-lisp :tangle config.el
(map! :leader
      :prefix ("N" . "org-roam notes")

      :desc "Capture new roam node"
      "c" 'org-roam-capture

      :desc "Open org roam inbox"
      "I o" 'org-roam-open-inbox

      :desc "Capture stuff in inbox"
      "I c" 'org-roam-capture-inbox

      :desc "Insert roam node link at point"
      "i" 'org-roam-node-insert

      :desc "Find roam node"
      "." 'org-roam-node-find

      :desc "Switch org-roam database"
      "s" 'org-roam-switch-db

      :desc "Update current org-roam database"
      "u" 'org-roam-db-sync

      :desc "Re-zoom on current node in org-roam-ui"
      "z" 'org-roam-ui-node-zoom

      :desc "Visualize org-roam database with org-roam-ui"
      "O" 'org-roam-default-overview

      :desc "Visualize org-roam database with org-roam-ui"
      "o" 'org-roam-open-dashboard)

#+END_SRC
*** Org Roam Capture Templates
#+BEGIN_SRC emacs-lisp :tangle config.el
(after! org-roam
  (setq org-roam-capture-templates
        '(("d" "default" plain "%?" :target
  (file+head "%<%Y%m%d%H%M%S>-${slug}.org" "#+title: ${title}\n")
  :unnarrowed t))))

#+END_SRC
*** Org Roam Olivetti Mode
#+BEGIN_SRC emacs-lisp :tangle config.el
(setq olivetti-style 'fancy
      olivetti-margin-width 100)
(setq-default olivetti-body-width 100)
(defun org-roam-olivetti-mode ()
  (interactive)
  (if (org-roam-file-p)
      (olivetti-mode))
  (if (org-roam-file-p)
      (doom-disable-line-numbers-h)))

(add-hook 'org-mode-hook 'org-roam-olivetti-mode)

#+END_SRC
*** Org Roam Dynamic Blocks
#+BEGIN_SRC emacs-lisp :tangle config.el
(add-load-path! "~/.emacs.d/org-nursery/lisp")
(require 'org-roam-dblocks)
(add-hook 'org-mode-hook 'org-roam-dblocks-autoupdate-mode)
#+END_SRC
*** Org Roam Export Setup
#+BEGIN_SRC emacs-lisp :tangle config.el
(setq org-id-extra-files 'org-agenda-text-search-extra-files)

#+END_SRC
*** Org Roam UI Setup
I want this to be able to automatically open ORUI in EAF Browser in a split to the right.  This kinda works now?
On Wayland, EAF doesn't work.
#+BEGIN_SRC emacs-lisp :tangle config.el
;(add-to-list 'display-buffer-alist '("^\\ORUI" display-buffer-in-side-window
;                                    '(side . right)
;                                    (window-width . 50)
;))
;(add-to-list 'display-buffer-alist '("^\\localhost:35901" display-buffer-in-side-window
;                                    '(side . right)
;                                    (window-width . 50)
;))

;;(setq org-roam-ui-browser-function 'eaf-open-browser) ; xorg
(setq org-roam-ui-browser-function 'browse-url) ; wayland

(defun open-org-roam-ui ()
  (interactive)
  (+evil/window-vsplit-and-follow)
  (org-roam-ui-open)
  (evil-window-left 1))

(defun kill-org-roam-ui ()
  (interactive)
;;  (delete-window (get-buffer-window "ORUI" t)) ; xorg
;;  (kill-buffer "ORUI") ; xorg
  (kill-buffer "*httpd*")
)

; xorg
;;(map! :leader
;;      :prefix ("N" . "org-roam notes")
;;      :desc "Visualize org-roam database with org-roam-ui"
;;      "v" 'open-org-roam-ui)

; wayland
(map! :leader
      :prefix ("N" . "org-roam notes")
      :desc "Visualize org-roam database with org-roam-ui"
      "v" 'org-roam-ui-open)

(map! :leader
      :prefix ("N" . "org-roam notes")
      :desc "Kill all org roam ui buffers"
      "V" 'kill-org-roam-ui)

#+END_SRC
** Org Agenda Configuration
*** Standard Org Agenda Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ Org agenda configuration ------;;;
;; Set span for agenda to be just daily
(setq org-agenda-span 1
      org-agenda-start-day "+0d"
      org-agenda-skip-timestamp-if-done t
      org-agenda-skip-deadline-if-done t
      org-agenda-skip-scheduled-if-done t
      org-agenda-skip-scheduled-if-deadline-is-shown t
      org-agenda-skip-timestamp-if-deadline-is-shown t
      org-log-into-drawer t)

;; Custom styles for dates in agenda
(custom-set-faces!
  '(org-agenda-date :inherit outline-1 :height 1.15)
  '(org-agenda-date-today :inherit outline-2 :height 1.15)
  '(org-agenda-date-weekend :inherit outline-1 :height 1.15)
  '(org-agenda-date-weekend-today :inherit outline-2 :height 1.15)
  '(org-super-agenda-header :inherit custom-button :weight bold :height 1.05)
  `(link :foreground unspecified :underline nil :background ,(nth 1 (nth 7 doom-themes--colors)))
  '(org-link :foreground unspecified))

;; Toggle completed entries function
(defun org-agenda-toggle-completed ()
  (interactive)
  (setq org-agenda-skip-timestamp-if-done (not org-agenda-skip-timestamp-if-done)
        org-agenda-skip-deadline-if-done (not org-agenda-skip-timestamp-if-done)
        org-agenda-skip-scheduled-if-done (not org-agenda-skip-timestamp-if-done))
  (org-agenda-redo))

(map!
  :map evil-org-agenda-mode-map
  :after org-agenda
  :nvmeg "s d" #'org-agenda-toggle-completed)

;; Ricing org agenda
(setq org-agenda-current-time-string "")
(setq org-agenda-time-grid '((daily) () "" ""))

(setq org-agenda-prefix-format '(
(agenda . "  %?-2i %t ")
 (todo . " %i %-12:c")
 (tags . " %i %-12:c")
 (search . " %i %-12:c")))

(setq org-agenda-hide-tags-regexp ".*")

(setq org-agenda-category-icon-alist
      `(("Teaching.p" ,(list (all-the-icons-faicon "graduation-cap" :height 0.8)) nil nil :ascent center)
        ("Family.s" ,(list (all-the-icons-faicon "home" :v-adjust 0.005)) nil nil :ascent center)
        ("Producer.p" ,(list (all-the-icons-faicon "youtube-play" :height 0.9)) nil nil :ascent center)
        ("Bard.p" ,(list (all-the-icons-faicon "music" :height 0.9)) nil nil :ascent center)
        ("Stories.s" ,(list (all-the-icons-faicon "book" :height 0.9)) nil nil :ascent center)
        ("Author.p" ,(list (all-the-icons-faicon "pencil" :height 0.9)) nil nil :ascent center)
        ("Gamedev.s" ,(list (all-the-icons-faicon "gamepad" :height 0.9)) nil nil :ascent center)
        ("Knowledge.p" ,(list (all-the-icons-faicon "database" :height 0.8)) nil nil :ascent center)
        ("Personal.p" ,(list (all-the-icons-material "person" :height 0.9)) nil nil :ascent center)
))

#+END_SRC

*** Org Agenda Convenience Functions
#+BEGIN_SRC emacs-lisp :tangle config.el
(defalias 'org-timestamp-down 'org-timestamp-down-day)
(defalias 'org-timestamp-up 'org-timestamp-up-day)

(defun org-categorize-by-roam-db-on-save ()
  (interactive)
  (when (string= (message "%s" major-mode) "org-mode")
    (when
      (string-prefix-p (concat "/home/" user-username "/Org") (expand-file-name (buffer-file-name)))
      (setq categorizer-old-line (line-number-at-pos))
      (evil-goto-first-line)
      (org-set-property "CATEGORY" (substring (string-trim-left (expand-file-name (buffer-file-name)) (concat "/home/" user-username "/Org/")) 0 (string-match "/" (string-trim-left (expand-file-name (buffer-file-name)) (concat "/home/" user-username "/Org/")))))
      (evil-goto-line categorizer-old-line)
    )
  )
)

(add-hook 'after-save-hook 'org-categorize-by-roam-db-on-save)

;; Function to be run when org-agenda is opened
(defun org-agenda-open-hook ()
  "Hook to be run when org-agenda is opened"
  (olivetti-mode))

;; Adds hook to org agenda mode, making follow mode active in org agenda
(add-hook 'org-agenda-mode-hook 'org-agenda-open-hook)

;; Easy refreshes on org agenda for syncthing file changes
;; adapted from https://www.reddit.com/r/orgmode/comments/mu6n5b/org_agenda_auto_updating/
;; and https://lists.gnu.org/archive/html/help-gnu-emacs/2008-12/msg00435.html
(defadvice org-agenda-list (before refresh-org-agenda-on-revert activate)
  (mapc (lambda (file)
          (unless (verify-visited-file-modtime (get-file-buffer file))
          (with-current-buffer (get-file-buffer file)
            (when (eq major-mode 'org-mode)
              (revert-buffer nil 'noconfirm)))))
        (org-agenda-files)))
(defadvice org-agenda-redo (before refresh-org-agenda-on-revert activate)
  (mapc (lambda (file)
          (unless (verify-visited-file-modtime (get-file-buffer file))
          (with-current-buffer (get-file-buffer file)
            (when (eq major-mode 'org-mode)
              (revert-buffer nil 'noconfirm)))))
        (org-agenda-files)))
(defadvice org-agenda-redo-all (before refresh-org-agenda-on-revert activate)
  (mapc (lambda (file)
          (unless (verify-visited-file-modtime (get-file-buffer file))
          (with-current-buffer (get-file-buffer file)
            (when (eq major-mode 'org-mode)
              (revert-buffer nil 'noconfirm)))))
        (org-agenda-files)))

;; Function to list all my available org agenda files and switch to them
(defun list-and-switch-to-agenda-file ()
  "Lists all available agenda files and switches to desired one"
  (interactive)
  (setq full-agenda-file-list nil)
  (setq choice (completing-read "Select agenda file:" org-agenda-files nil t))
  (find-file choice))

(map! :leader
      :desc "Switch to specific org agenda file"
      "o a s" 'list-and-switch-to-agenda-file)

(defun org-agenda-switch-with-roam ()
  "Switches to org roam node file and database from org agenda view"
  (interactive)
  (org-agenda-switch-to)
  (if (f-exists-p (concat (dir!) "/org-roam.db"))
    (org-roam-switch-db (replace-regexp-in-string (concat "\\/home\\/" user-username "\\/Org\\/") "" (f-parent (dir!))) t))
  (if (f-exists-p (concat (f-parent (dir!)) "/org-roam.db"))
    (org-roam-switch-db (replace-regexp-in-string (concat "\\/home\\/" user-username "\\/Org\\/") "" (f-parent (f-parent (dir!)))) t))
  (org-roam-olivetti-mode)
)

(map!
  :map evil-org-agenda-mode-map
  :after org-agenda
  :nvmeg "<RET>" #'org-agenda-switch-with-roam
  :nvmeg "<return>" #'org-agenda-switch-with-roam)
(map!
  :map org-agenda-mode-map
  :after org-agenda
  :nvmeg "<RET>" #'org-agenda-switch-with-roam
  :nvmeg "<return>" #'org-agenda-switch-with-roam)

#+END_SRC
*** Org Super Agenda Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
(require 'org-super-agenda)

(setq org-super-agenda-groups
       '(;; Each group has an implicit boolean OR operator between its selectors.
         (:name " Overdue "  ; Optionally specify section name
                :scheduled past
                :order 2
                :face 'error)

         (:name "Personal "
                :and(:file-path "Personal.p" :not (:tag "event"))
                :order 3)

         (:name "Family "
                :and(:file-path "Family.s" :not (:tag "event"))
                :order 3)

         (:name "Teaching "
                :and(:file-path "Teaching.p" :not (:tag "event"))
                :order 3)

         (:name "Gamedev "
                :and(:file-path "Gamedev.s" :not (:tag "event"))
                :order 3)

         (:name "Youtube "
                :and(:file-path "Producer.p" :not (:tag "event"))
                :order 3)

         (:name "Music "
                :and(:file-path "Bard.p" :not (:tag "event"))
                :order 3)

         (:name "Storywriting "
                :and(:file-path "Stories.s" :not (:tag "event"))
                :order 3)

         (:name "Writing "
                :and(:file-path "Author.p" :not (:tag "event"))
                :order 3)

         (:name "Learning "
                :and(:file-path "Knowledge.p" :not (:tag "event"))
                :order 3)

          (:name " Today "  ; Optionally specify section name
                :time-grid t
                :date today
                :scheduled today
                :order 1
                :face 'warning)

))

(org-super-agenda-mode t)

(map! :desc "Next line"
      :map org-super-agenda-header-map
      "j" 'org-agenda-next-line)

(map! :desc "Next line"
      :map org-super-agenda-header-map
      "k" 'org-agenda-previous-line)

#+END_SRC

*** NO Org Agenda Notifications
#+BEGIN_SRC emacs-lisp
(add-load-path! "~/.emacs.d/org-yaap")
(require 'org-yaap)
(setq org-yaap-alert-title "Org Agenda")
(setq org-yaap-overdue-alerts 20)
(setq org-yaap-alert-before 20)
(setq org-yaap-daily-alert '(7 30))
(setq org-yaap-daemon-idle-time 30)
(org-yaap-mode 1)
#+END_SRC
*** Calfw
#+begin_src emacs-lisp :tangle config.el
(require 'calfw)
(require 'calfw-org)
(setq cfw:org-agenda-schedule-args '(:timestamp))

(map! :leader :desc "Open org calendar"
      "O c" 'cfw:open-org-calendar)
#+end_src
*** NO Org Timeblock
#+begin_src emacs-lisp
(add-load-path! "~/.emacs.d/org-timeblock")
(require 'org-timeblock)

(map! :leader :desc "Open org timeblock"
      "O c" 'org-timeblock)

(map! :desc "Next day"
      :map org-timeblock-mode-map
      :nvmeg "l" 'org-timeblock-day-later)
(map! :desc "Previous day"
      :map org-timeblock-mode-map
      :nvmeg "h" 'org-timeblock-day-earlier)
(map! :desc "Schedule event"
      :map org-timeblock-mode-map
      :nvmeg "m" 'org-timeblock-schedule)
(map! :desc "Event duration"
      :map org-timeblock-mode-map
      :nvmeg "d" 'org-timeblock-set-duration)

#+end_src
** Magit Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ magit configuration ------;;;
;; Need the following two blocks to make magit work with git bare repos
(require 'magit-todos)
(setq magit-todos-keywords-list '("TODO" "FIXME" "HACK" "REVIEW" "DEPRECATED" "BUG"))
(magit-todos-mode 1)

(add-load-path! "~/.emacs.d/magit-file-icons")
(require 'magit-file-icons)
(setq magit-file-icons-icon-for-file-func 'all-the-icons-icon-for-file)
(setq magit-file-icons-icon-for-dir-func 'all-the-icons-icon-for-dir)
(magit-file-icons-mode 1)

#+END_SRC
** Ibuffer Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
(require 'all-the-icons-ibuffer)
(add-hook 'ibuffer-mode-hook #'all-the-icons-ibuffer-mode)
(setq all-the-icons-ibuffer-color-icon t)
(evil-set-initial-state 'ibuffer-mode 'normal)

#+END_SRC
** Dired Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ dired configuration ------;;;

(add-hook 'dired-mode-hook 'all-the-icons-dired-mode)
(setq all-the-icons-dired-monochrome nil)

(map! :desc "Increase font size"
      "C-=" 'text-scale-increase

      :desc "Decrease font size"
      "C--" 'text-scale-decrease

      :desc "Jump to dired"
      "M-f" 'dired-jump
)


#+END_SRC
** Ranger Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ ranger configuration ------;;;

(map! :map ranger-mode-map
      :desc "Mark current file"
      "m" 'ranger-mark

      :desc "Toggle mark on current file"
      "x" 'ranger-toggle-mark
)

#+END_SRC
** hledger-mode Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;-- hledger-mode configuration ;;;--

;;; Basic configuration
(require 'hledger-mode)

;; To open files with .journal extension in hledger-mode
(add-to-list 'auto-mode-alist '("\\.journal\\'" . hledger-mode))

;; The default journal location is too opinionated.
(setq hledger-jfile (concat user-home-directory "/Org/Family.s/Notes/hledger.journal"))

;;; Auto-completion for account names
;; For company-mode users:
(add-to-list 'company-backends 'hledger-company)

(evil-define-key* 'normal hledger-view-mode-map "q" 'kill-current-buffer)
(evil-define-key* 'normal hledger-view-mode-map "[" 'hledger-prev-report)
(evil-define-key* 'normal hledger-view-mode-map "]" 'hledger-next-report)

(map! :leader
      :prefix ("l" . "hledger")
      :desc "Exec hledger command"
      "c" 'hledger-run-command

      :desc "Generate hledger balancesheet"
      "b" 'hledger-balancesheet*

      :desc "Generate hledger daily report"
      "d" 'hledger-daily-report*)

(map! :localleader
      :map hledger-mode-map

      :desc "Reschedule transaction at point"
      "d s" 'hledger-reschedule

      :desc "Edit amount at point"
      "t a" 'hledger-edit-amount)

#+END_SRC
** NO Tab Bar Configuration
I don't have this active right now since it's kinda weird with pgtk...
#+BEGIN_SRC emacs-lisp
;;;-- tab-bar-mode configuration ;;;--

;; Kbd tab navigation
(map!
  :map evil-normal-state-map
  "H" #'tab-bar-switch-to-prev-tab
  "L" #'tab-bar-switch-to-next-tab
  "C-<iso-lefttab>" #'tab-bar-switch-to-prev-tab
  "C-<tab>" #'tab-bar-switch-to-next-tab)

(evil-global-set-key 'normal (kbd "C-w") 'tab-bar-close-tab)
(evil-global-set-key 'normal (kbd "C-t") 'tab-bar-new-tab)

(setq tab-bar-new-tab-choice "*dashboard*")

(tab-bar-mode t)

#+END_SRC
** Focus Mode Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
(require 'focus)

(map! :leader
      :prefix ("F" . "Focus mode")
      :desc "Toggle focus mode"
      "t" 'focus-mode

      :desc "Pin focused section"
      "p" 'focus-pin

      :desc "Unpin focused section"
      "u" 'focus-unpin)

(add-to-list 'focus-mode-to-thing '(org-mode . org-element))
(add-to-list 'focus-mode-to-thing '(python-mode . paragraph))
(add-to-list 'focus-mode-to-thing '(lisp-mode . paragraph))

;(add-hook 'org-mode-hook #'focus-mode)

#+END_SRC
** Helpful Mode Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ helpful configuration ------;;;

(evil-set-initial-state 'helpful-mode 'normal)
(evil-define-key 'normal helpful-mode-map
  "j" 'evil-next-visual-line
  "k" 'evil-previous-visual-line
  "q" 'helpful-kill-buffers)

#+END_SRC
** mu4e Configuration
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;------ helpful configuration ------;;;
(add-load-path! "~/.nix-profile/share/emacs/site-lisp/elpa/mu4e-1.12.2")
(require 'mu4e)
(require 'mu4e-contrib)
(require 'mu4e-actions)

(after! mu4e
  (setq mu4e-modeline-support nil)
  (setq mu4e-sent-folder (lambda (msg) (concat "/" (nth 1 (split-string (mu4e-message-field msg :maildir) "/" )) "/Sent")))
  (setq mu4e-drafts-folder (lambda (msg) (concat "/" user-mail-address "/Drafts")))
  (setq mu4e-trash-folder (lambda (msg) (concat "/" (nth 1 (split-string (mu4e-message-field msg :maildir) "/" )) "/Trash")))
  (setq mu4e-refile-folder (lambda (msg) (concat "/" (nth 1 (split-string (mu4e-message-field msg :maildir) "/" )) "/Folders/" (completing-read "Refile msg to: " (directory-files (concat "~/.mail/" (nth 1 (split-string (mu4e-message-field msg :maildir) "/" )) "/Folders"))))))

  (setq mu4e-index-lazy-check t)
  (setq mu4e-index-cleanup t)
  (setq mu4e-update-interval 120)
  (mu4e-alert-enable-notifications)

  (define-key mu4e-main-mode-map (kbd "<SPC>") #'doom/leader)
  (define-key mu4e-headers-mode-map (kbd "<SPC>") #'doom/leader)
  (define-key mu4e-view-mode-map (kbd "<SPC>") #'doom/leader)

  (define-key mu4e-main-mode-map (kbd "g g") #'evil-goto-first-line)
  (define-key mu4e-main-mode-map (kbd "G") #'evil-goto-line)
  (define-key mu4e-main-mode-map (kbd "h") #'evil-backward-char)
  (define-key mu4e-main-mode-map (kbd "l") #'evil-forward-char)
  (define-key mu4e-main-mode-map (kbd "w") #'evil-forward-word-begin)

  (unbind-key "g" mu4e-headers-mode-map)
  (define-key mu4e-headers-mode-map (kbd "g g") #'evil-goto-first-line)
  (define-key mu4e-headers-mode-map (kbd "G") #'evil-goto-line)
  (define-key mu4e-headers-mode-map (kbd "h") #'evil-backward-char)
  (define-key mu4e-headers-mode-map (kbd "l") #'evil-forward-char)
  (define-key mu4e-headers-mode-map (kbd "w") #'evil-forward-word-begin)

  (unbind-key "g" mu4e-view-mode-map)
  (define-key mu4e-view-mode-map (kbd "g g") #'evil-goto-first-line)
  (define-key mu4e-view-mode-map (kbd "G") #'evil-goto-line)
  (define-key mu4e-view-mode-map (kbd "h") #'evil-backward-char)
  (define-key mu4e-view-mode-map (kbd "l") #'evil-forward-char)
  (define-key mu4e-view-mode-map (kbd "w") #'evil-forward-word-begin)

  (map! :map 'mu4e-main-mode-map :desc "Jump to maildir" :ge "J" #'mu4e-search-maildir)
  (map! :map 'mu4e-main-mode-map :desc "Next line" :ge "j" #'evil-next-visual-line)
  (map! :map 'mu4e-main-mode-map :desc "Prev line" :ge "k" #'evil-previous-visual-line)

  (map! :map 'mu4e-headers-mode-map :desc "Jump to maildir" :ge "J" #'mu4e-search-maildir)
  (map! :map 'mu4e-headers-mode-map :desc "Next line" :ge "j" #'evil-next-visual-line)
  (map! :map 'mu4e-headers-mode-map :desc "Prev line" :ge "k" #'evil-previous-visual-line)
  (map! :map 'mu4e-headers-mode-map :desc "Next char" :ge "l" #'evil-forward-char)
  (map! :map 'mu4e-headers-mode-map :desc "Update mail and index" :ge "U" #'mu4e-update-mail-and-index)
  (map! :map 'mu4e-headers-mode-map :desc "Compose reply" :ge "r" #'mu4e-compose-reply)
  (map! :map 'mu4e-headers-mode-map :desc "Archive message" :ge "e" #'mu4e-headers-mark-for-refile)

  (map! :map 'mu4e-view-mode-map :desc "Jump to maildir" :ge "J" #'mu4e-search-maildir)
  (map! :map 'mu4e-view-mode-map :desc "Next line" :ge "j" #'evil-next-visual-line)
  (map! :map 'mu4e-view-mode-map :desc "Prev line" :ge "k" #'evil-previous-visual-line)
  (map! :map 'mu4e-view-mode-map :desc "Update mail and index" :ge "U" #'mu4e-update-mail-and-index)
  (map! :map 'mu4e-view-mode-map :desc "Compose reply" :ge "r" #'mu4e-compose-reply)
  (map! :map 'mu4e-view-mode-map :desc "Archive message" :ge "e" #'mu4e-view-mark-for-refile)

  (add-to-list 'mu4e-header-info-custom
    '(:maildir-folder-no-account .
       ( :name "Maildir folder without account"  ;; long name, as seen in the message-view
         :shortname "Folder"           ;; short name, as seen in the headers view
         :help "Name of the subfolder without the maildir" ;; tooltip
         :function (lambda (msg) (substring (mu4e-message-field msg :maildir) (+ 2 (length (nth 1 (split-string (mu4e-message-field msg :maildir) "/" )))))))))
  (add-to-list 'mu4e-bookmarks
    '( :name  "Unified inbox"
       :query "maildir://.*/INBOX/"
       :key   ?i))
    (setq mu4e-headers-fields
      '((:account-stripe . 1)
       (:account . 25)
       (:human-date . 12)
       (:flags . 6)
       (:from-or-to . 20)
       (:maildir-folder-no-account . 30)
     (:subject)))

  (add-hook 'mu4e-compose-mode-hook #'(lambda () (auto-save-mode -1)))
  (setq mu4e-sent-messages-behavior 'delete)

  (setq sendmail-program "~/.nix-profile/bin/msmtp")
  (setq send-mail-function 'smtpmail-send-it)
  (setq message-sendmail-f-is-evil t)
  (setq message-sendmail-extra-arguments '("--read-envelope-from"))
  (setq message-send-mail-function 'message-send-mail-with-sendmail)
  (if (file-exists-p "~/.emacs.d/mu4e-private.el") (load! "~/.emacs.d/mu4e-private.el"))

  ;; https://emacs.stackexchange.com/questions/3061/how-to-stop-mu4e-from-inserting-line-breaks
  (defun no-auto-fill ()
      "Turn off auto-fill-mode."
      (auto-fill-mode -1))

  (defun no-org-msg-mode ()
    "Disable org-msg-mode since it doesn't respect multiline emails"
      (org-msg-mode 0))

  (add-hook 'mu4e-compose-mode-hook #'no-auto-fill)
  (add-hook 'mu4e-compose-pre-hook #'no-org-msg-mode)

  (mu4e--start) ;; start mu4e silently

)

#+END_SRC
** Direnv
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;-- Load emacs direnv;;;--
(require 'direnv)
(direnv-mode)
#+END_SRC
** Projectile
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;-- projectile wrapper commands ;;;--
(defun projectile-goto-project ()
  (interactive)
  (projectile-switch-project t)
  ;;(neotree-dir (projectile-project-root))
)

(map! :leader
      :desc "Open project"
      "p p" #'projectile-goto-project)
(map! :leader
      :desc "Projectile commander"
      "p @" #'projectile-commander)
(map! :leader
      :desc "Projectile grep"
      "/" #'projectile-grep)
(after! projectile (put 'projectile-grep 'disabled nil))

#+END_SRC
** sudo-edit
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;-- projectile wrapper commands ;;;--
(require 'sudo-edit)
(setq sudo-edit-local-method "doas")

(map! :leader
      :desc "Open current file as root"
      "f U" #'sudo-edit-current-file)
(map! :leader
      :desc "Find a file and open as root"
      "f u" #'sudo-edit-find-file)

#+END_SRC
** LSP
#+BEGIN_SRC emacs-lisp :tangle config.el
;;;-- LSP stuff ;;;--
(require 'lsp-mode)
(require 'nix-mode)
(require 'gdscript-mode)

(add-hook 'nix-mode-hook 'lsp-deferred)
(add-hook 'gdscript-mode-hook 'lsp-deferred)

(setq gdscript-godot-executable "godot4")

(setq lsp-java-workspace-dir (concat user-home-directory "/.local/share/doom/java-workspace"))

(setq lsp-treemacs-deps-position-params
  '((side . right)
   (slot . 1)
   (window-width . 35)))

(setq lsp-treemacs-symbols-position-params
'((side . right)
 (slot . 2)
 (window-width . 35)))

(map! :leader :desc "Open treemacs symbol outliner" "o s" #'lsp-treemacs-symbols
              :desc "Hide neotree" "o S" #'treemacs-quit)

(setq +format-on-save-enabled-modes '(not emacs-lisp-mode sql-mode tex-mode latex-mode org-msg-edit-mode nix-mode))

(defun lsp-booster--advice-json-parse (old-fn &rest args)
  "Try to parse bytecode instead of json."
  (or
   (when (equal (following-char) ?#)
     (let ((bytecode (read (current-buffer))))
       (when (byte-code-function-p bytecode)
         (funcall bytecode))))
   (apply old-fn args)))
(advice-add (if (progn (require 'json)
                       (fboundp 'json-parse-buffer))
                'json-parse-buffer
              'json-read)
            :around
            #'lsp-booster--advice-json-parse)

(defun lsp-booster--advice-final-command (old-fn cmd &optional test?)
  "Prepend emacs-lsp-booster command to lsp CMD."
  (let ((orig-result (funcall old-fn cmd test?)))
    (if (and (not test?)                             ;; for check lsp-server-present?
             (not (file-remote-p default-directory)) ;; see lsp-resolve-final-command, it would add extra shell wrapper
             lsp-use-plists
             (not (functionp 'json-rpc-connection))  ;; native json-rpc
             (executable-find "emacs-lsp-booster"))
        (progn
          (when-let ((command-from-exec-path (executable-find (car orig-result))))  ;; resolve command from exec-path (in case not found in $PATH)
            (setcar orig-result command-from-exec-path))
          (message "Using emacs-lsp-booster for %s!" orig-result)
          (cons "emacs-lsp-booster" orig-result))
      orig-result)))
(advice-add 'lsp-resolve-final-command :around #'lsp-booster--advice-final-command)

(map! :leader :desc "Find definition using lsp" "L d" #'lsp-find-definition)

#+END_SRC
** DevDocs
#+BEGIN_SRC emacs-lisp :tangle config.el
;; devdocs are cool
(require 'devdocs)

(map! :leader :desc "Peruse devdocs" "L p" #'devdocs-peruse)
#+END_SRC

** Terminal
#+BEGIN_SRC emacs-lisp :tangle config.el
(add-to-list 'tramp-remote-path 'tramp-own-remote-path)
(after! vterm
  (add-to-list 'vterm-tramp-shells '("ssh" "zsh")) ;; I use zsh on all my servers
)
#+END_SRC
** Elfeed
#+BEGIN_SRC emacs-lisp :tangle config.el
;; I source my rss from my freshrss instance
;; I login with a private elisp file: ~/.emacs.d/freshrss-elfeed.el
;; freshrss-elfeed.el looks like this:
;;(elfeed-protocol-enable)
;;(setq elfeed-use-curl t)
;;(setq elfeed-set-timeout 36000)
;;(setq elfeed-log-level 'debug)
;;(setq freshrss-hostname "https://freshrss.example.com")
;;(setq elfeed-feeds (list
;;                    (list "fever+https://user@freshrss.example.com"
;;                      :api-url "https://user@freshrss.example.com/api/fever.php"
;;                      :password "mYsUpErCoMpLiCaTeDp@s$w0rD"))))
;;(setq main-elfeed-feed "https://user@freshrss.example.com/api/fever.php")

(if (file-exists-p "~/.emacs.d/freshrss-elfeed.el") (load! "~/.emacs.d/freshrss-elfeed.el"))
(setq elfeed-search-filter "@6-months-ago +unread")
(setq browse-url-chromium-program "mpv")
(setq browse-url-chrome-program "mpv")
(setq browse-url-handlers '(("youtube.com" . browse-url-chrome)
                            ("youtu.be" . browse-url-chrome)
                            ("odcyn.com" . browse-url-chrome)
                            ("odysee.com" . browse-url-chrome)
                            ("tilvids.com" . browse-url-chrome)))
(map! :leader :desc "Open elfeed" "O n" #'elfeed)
(map! :map 'elfeed-search-mode-map :desc "Open url" :n "g o" #'elfeed-search-browse-url)

(defun elfeed-full-update ()
  (interactive)
  (elfeed-search-update--force)
  (cl-loop for entry in elfeed-search-entries
     do (elfeed-untag-1 entry 'unread))
  (elfeed-protocol-fever-reinit freshrss-hostname)
  (elfeed-update))

(add-hook 'elfeed-search-mode-hook 'elfeed-full-update)
(add-hook 'elfeed-search-update-hook (lambda () (goto-char (point-min))))

#+END_SRC

* My init.el
This section is the [[./init.el][init.el]] section, which controls which Doom modules are loaded.

=SPC h d h= (vim) or =C-h d h= (non-vim) can be used to access Doom's documentation (including a "Module Index").

=K= (vim) or =C-c c k= (non-vim) can be used to view a module's documentation (this can help you discover module flags as well).

=gd= (vim) or =C-c c d= (non-vim) will let you browse a module's directory (source code).

#+BEGIN_SRC emacs-lisp :tangle init.el
(doom! :input
       ;;chinese
       ;;japanese
       ;;layout            ; auie,ctsrnm is the superior home row

       :completion
       company           ; the ultimate code completion backend
       ;;helm              ; the *other* search engine for love and life
       ;;ido               ; the other *other* search engine...
       ;;ivy               ; a search engine for love and life
       vertico           ; the search engine of the future

       :ui
       ;;deft              ; notational velocity for Emacs
       doom              ; what makes DOOM look the way it does
       ;;doom-dashboard    ; a nifty splash screen for Emacs
       doom-quit         ; DOOM quit-message prompts when you quit Emacs
       (emoji +unicode)  ; 🙂
       hl-todo           ; highlight todo/fixme/note/deprecated/hack/review
       ;;hydra
       ;;indent-guides     ; highlighted indent columns
       ;;ligatures         ; ligatures and symbols to make your code pretty again
       ;;minimap           ; show a map of the code on the side
       modeline          ; snazzy, Atom-inspired modeline, plus API
       nav-flash         ; blink cursor line after big motions
       neotree           ; a project drawer, like NERDTree for vim
       ophints           ; highlight the region an operation acts on
       (popup +defaults)   ; tame sudden yet inevitable temporary windows
       ;;tabs              ; a tab bar for Emacs
       treemacs          ; a project drawer, like neotree but cooler
       unicode           ; extended unicode support for various languages
       vc-gutter         ; vcs diff in the fringe
       ;;vi-tilde-fringe   ; fringe tildes to mark beyond EOB
       window-select     ; visually switch windows
       workspaces        ; tab emulation, persistence & separate workspaces
       ;;zen               ; distraction-free coding or writing

       :editor
       (evil +everywhere); come to the dark side, we have cookies
       file-templates    ; auto-snippets for empty files
       fold              ; (nigh) universal code folding
       (format +onsave)  ; automated prettiness
       ;;god               ; run Emacs commands without modifier keys
       ;;lispy             ; vim for lisp, for people who don't like vim
       multiple-cursors  ; editing in many places at once
       ;;objed             ; text object editing for the innocent
       ;;parinfer          ; turn lisp into python, sort of
       ;;rotate-text       ; cycle region at point between text candidates
       snippets          ; my elves. They type so I don't have to
       word-wrap         ; soft wrapping with language-aware indent

       :emacs
       (dired +ranger)   ; making dired pretty [functional]
       electric          ; smarter, keyword-based electric-indent
       ibuffer           ; interactive buffer management
       undo              ; persistent, smarter undo for your inevitable mistakes
       vc                ; version-control and Emacs, sitting in a tree

       :term
       eshell            ; the elisp shell that works everywhere
       ;;shell             ; simple shell REPL for Emacs
       ;;term              ; basic terminal emulator for Emacs
       vterm             ; the best terminal emulation in Emacs

       :checkers
       syntax              ; tasing you for every semicolon you forget
       (spell +flyspell) ; tasing you for misspelling mispelling
       ;;grammar           ; tasing grammar mistake every you make

       :tools
       ;;ansible
       ;;biblio            ; Writes a PhD for you (citation needed)
       ;;debugger          ; stepping through code, to help you add bugs
       ;;direnv
       docker
       ;;editorconfig      ; let someone else argue about tabs vs spaces
       ;;ein               ; tame Jupyter notebooks with emacs
       (eval +overlay)     ; run code, run (also, repls)
       ;;gist              ; interacting with github gists
       lookup              ; navigate your code and its documentation
       (lsp)               ; M-x vscode
       magit             ; a git porcelain for Emacs
       ;;make              ; run make tasks from Emacs
       ;;pass              ; password manager for nerds
       ;;pdf               ; pdf enhancements
       ;;prodigy           ; managing external services & code builders
       rgb               ; creating color strings
       ;;taskrunner        ; taskrunner for all your projects
       ;;terraform         ; infrastructure as code
       ;;tmux              ; an API for interacting with tmux
       ;;upload            ; map local to remote projects via ssh/ftp

       :os
       ;;(:if IS-MAC macos)  ; improve compatibility with macOS
       tty               ; improve the terminal Emacs experience

       :lang
       ;;agda              ; types of types of types of types...
       ;;beancount         ; mind the GAAP
       ;;cc                ; C > C++ == 1
       ;;clojure           ; java with a lisp
       common-lisp       ; if you've seen one lisp, you've seen them all
       ;;coq               ; proofs-as-programs
       ;;crystal           ; ruby at the speed of c
       ;;csharp            ; unity, .NET, and mono shenanigans
       data              ; config/data formats
       ;;(dart +flutter)   ; paint ui and not much else
       ;;dhall
       ;;elixir            ; erlang done right
       ;;elm               ; care for a cup of TEA?
       emacs-lisp        ; drown in parentheses
       ;;erlang            ; an elegant language for a more civilized age
       ;;ess               ; emacs speaks statistics
       ;;factor
       ;;faust             ; dsp, but you get to keep your soul
       ;;fortran           ; in FORTRAN, GOD is REAL (unless declared INTEGER)
       ;;fsharp            ; ML stands for Microsoft's Language
       ;;fstar             ; (dependent) types and (monadic) effects and Z3
       (gdscript +lsp)         ; the language you waited for
       ;;(go +lsp)         ; the hipster dialect
       (haskell +lsp)    ; a language that's lazier than I am
       ;;hy                ; readability of scheme w/ speed of python
       ;;idris             ; a language you can depend on
       json              ; At least it ain't XML
       (java +lsp) ; the poster child for carpal tunnel syndrome
       javascript        ; all(hope(abandon(ye(who(enter(here))))))
       ;;julia             ; a better, faster MATLAB
       (kotlin +lsp)            ; a better, slicker Java(Script)
       latex             ; writing papers in Emacs has never been so fun
       ;;lean              ; for folks with too much to prove
       ;;ledger            ; be audit you can be
       lua                 ; one-based indices? one-based indices
       markdown            ; writing docs for people to ignore
       ;;nim               ; python + lisp at the speed of c
       (nix +lsp)              ; I hereby declare "nix geht mehr!"
       ;;ocaml             ; an objective camel
       (org +roam2)      ; organize your plain life in plain text
       ;;php               ; perl's insecure younger brother
       ;;plantuml          ; diagrams for confusing people more
       ;;purescript        ; javascript, but functional
       python            ; beautiful is better than ugly
       ;;qt                ; the 'cutest' gui framework ever
       ;;racket            ; a DSL for DSLs
       ;;raku              ; the artist formerly known as perl6
       ;;rest              ; Emacs as a REST client
       ;;rst               ; ReST in peace
       ;;(ruby +rails)     ; 1.step {|i| p "Ruby is #{i.even? ? 'love' : 'life'}"}
       ;;rust              ; Fe2O3.unwrap().unwrap().unwrap().unwrap()
       ;;scala             ; java, but good
       ;;(scheme +guile)   ; a fully conniving family of lisps
       sh                ; she sells {ba,z,fi}sh shells on the C xor
       ;;sml
       ;;solidity          ; do you need a blockchain? No.
       ;;swift             ; who asked for emoji variables?
       ;;terra             ; Earth and Moon in alignment for performance.
       web               ; the tubes
       yaml              ; JSON, but readable
       ;;zig               ; C, but simpler

       :email
       (mu4e +org)
       ;;notmuch
       ;;(wanderlust +gmail)

       :app
       calendar
       ;;emms
       ;;everywhere        ; *leave* Emacs!? You must be joking
       ;;irc               ; how neckbeards socialize
       rss               ; emacs as an RSS reader
       ;;twitter           ; twitter client https://twitter.com/vnought

       :config
       ;;literate
       (default +bindings +smartparens))

#+END_SRC

* My packages.el
The [[./packages.el][packages.el]] file allows extra packages to be configured outside of the typical Doom modules from [[./init.el][init.el]].

Packages are declared via =(package! some-package)= where =some-package= is from MELPA, ELPA, or emacsmirror.

There are other ways to install packages outside of Emacs package archives, including directly from git.  Installing a package directly from git requires a =:recipe=.  Here is [[https://github.com/raxod502/straight.el#the-recipe-format][a full documentation of the recipe format]].

Doom's built-in packages can also be modified here:
- =(package! builtin-package :disable t)= to disable
- =(package! builtin-package-2 :recipe (:repo "myfork/package"))= to override the recipe
  - Side-note: the full recipe for built-in packages does not need specification, as the override will inherit the unspecified properties directly from Doom

Any git package can be configured for a particular commit or branch:
- =(package! builtin-package :recipe (:branch "develop")= for a particular branch
- =(package! builtin-package :pin "1a2b3c4d5e")= for a particular commit
- =(unpin! pinned-package another-pinned-package)= to get bleeding edge instead of Doom's stability

#+BEGIN_SRC emacs-lisp :tangle packages.el
(package! org-analyzer :pin "0908eea")
(package! embark :pin "0908eea")
(package! dashboard)
(package! direnv)
(package! org :pin "5bdfc02c6fa1b9ad4f075ac1ad1e4086ead310db")
(package! org-modern)
(package! org-super-agenda)
(package! emacsql :pin "c1a4407")
(package! org-roam-ui)
(package! org-transclusion)
(package! org-download)
(package! org-yt)
(package! toc-org)
(package! lister)
(package! all-the-icons-ibuffer)
(package! all-the-icons-dired)
(package! all-the-icons-completion)
(package! ox-reveal)
(package! magit-todos)
(package! hledger-mode)
(package! rainbow-mode)
(package! crdt)
(package! ess)
(package! openwith)
(package! ob-mermaid)
(package! focus)
(package! olivetti)
(package! async)
(package! centered-cursor-mode)
(package! elfeed)
(package! elfeed-protocol)
(package! docker-tramp :disable t)
(package! org-ql)
(package! persist)
(package! sudo-edit)
(package! solaire-mode :disable t)
(package! el-patch)
(package! devdocs)
#+END_SRC
* Nix Integration
In order to have Nix load my Doom Emacs configuration [[./doom.nix][doom.nix]], which I source in the =imports= block of my [[../../../profiles/work/home.nix][home.nix]].
#+BEGIN_SRC nix :tangle doom.nix
{ config, lib, pkgs, pkgs-emacs, pkgs-stable, inputs, userSettings, systemSettings, ... }:
let
  themePolarity = lib.removeSuffix "\n" (builtins.readFile (./. + "../../../../themes"+("/"+userSettings.theme)+"/polarity.txt"));
  dashboardLogo = ./. + "/nix-" + themePolarity + ".webp";
in
{
  imports = [
    inputs.nix-doom-emacs.hmModule
    ../git/git.nix
    ../../shell/sh.nix
    ../../shell/cli-collection.nix
  ];

  programs.doom-emacs = {
    enable = true;
    emacsPackage = pkgs-emacs.emacs29-pgtk;
    doomPrivateDir = ./.;
    # This block from https://github.com/znewman01/dotfiles/blob/be9f3a24c517a4ff345f213bf1cf7633713c9278/emacs/default.nix#L12-L34
    # Only init/packages so we only rebuild when those change.
    doomPackageDir = let
      filteredPath = builtins.path {
        path = ./.;
        name = "doom-private-dir-filtered";
        filter = path: type:
          builtins.elem (baseNameOf path) [ "init.el" "packages.el" ];
      };
      in pkgs-emacs.linkFarm "doom-packages-dir" [
        {
          name = "init.el";
          path = "${filteredPath}/init.el";
        }
        {
          name = "packages.el";
          path = "${filteredPath}/packages.el";
        }
        {
          name = "config.el";
          path = pkgs-emacs.emptyFile;
        }
      ];
  # End block
  };

  home.file.".emacs.d/themes/doom-stylix-theme.el".source = config.lib.stylix.colors {
      template = builtins.readFile ./themes/doom-stylix-theme.el.mustache;
      extension = ".el";
  };

  home.packages = (with pkgs-emacs; [
    emacs-lsp-booster
    nil
    nixfmt
    kotlin-language-server
    file
    wmctrl
    jshon
    aria
    hledger
    hunspell hunspellDicts.en_US-large
    (pkgs-emacs.mu.override { emacs = emacs29-pgtk; })
    (pkgs.callPackage ./pkgs/org-analyzer.nix {})
    emacsPackages.mu4e
    isync
    msmtp
    (python3.withPackages (p: with p; [
      pandas
      requests
      epc lxml
      pysocks
      pymupdf
      markdown
    ]))
  ]) ++ (with pkgs-stable; [
    nodejs
    nodePackages.mermaid-cli
  ]) ++ (with pkgs; [
    openssl
    stunnel
  ]);

  services.mbsync = {
    enable = true;
    package = pkgs-stable.isync;
    frequency = "*:0/5";
  };

  home.file.".emacs.d/org-yaap" = {
    source = "${inputs.org-yaap}";
    recursive = true;
  };

  home.file.".emacs.d/org-side-tree" = {
    source = "${inputs.org-side-tree}";
    recursive = true;
  };

  home.file.".emacs.d/org-timeblock" = {
    source = "${inputs.org-timeblock}";
    recursive = true;
  };

  home.file.".emacs.d/org-nursery" = {
    source = "${inputs.org-nursery}";
  };

  home.file.".emacs.d/org-krita" = {
    source = "${inputs.org-krita}";
  };

  home.file.".emacs.d/org-xournalpp" = {
    source = "${inputs.org-xournalpp}";
  };

  home.file.".emacs.d/org-sliced-images" = {
    source = "${inputs.org-sliced-images}";
  };

  home.file.".emacs.d/magit-file-icons" = {
    source = "${inputs.magit-file-icons}";
  };

  home.file.".emacs.d/dashboard-logo.webp".source = dashboardLogo;
  home.file.".emacs.d/scripts/copy-link-or-file/copy-link-or-file-to-clipboard.sh" = {
    source = ./scripts/copy-link-or-file/copy-link-or-file-to-clipboard.sh;
    executable = true;
  };

  home.file.".emacs.d/phscroll" = {
    source = "${inputs.phscroll}";
  };

  home.file.".emacs.d/mini-frame" = {
    source = "${inputs.mini-frame}";
  };

  home.file.".emacs.d/system-vars.el".text = ''
  ;;; ~/.emacs.d/config.el -*- lexical-binding: t; -*-

  ;; Import relevant variables from flake into emacs

  (setq user-full-name "''+userSettings.name+''") ; name
  (setq user-username "''+userSettings.username+''") ; username
  (setq user-mail-address "''+userSettings.email+''") ; email
  (setq user-home-directory "/home/''+userSettings.username+''") ; absolute path to home directory as string
  (setq user-default-roam-dir "''+userSettings.defaultRoamDir+''") ; absolute path to home directory as string
  (setq system-nix-profile "''+systemSettings.profile+''") ; what profile am I using?
  (setq system-wm-type "''+userSettings.wmType+''") ; wayland or x11?
  (setq doom-font (font-spec :family "''+userSettings.font+''" :size 20)) ; import font
  (setq dotfiles-dir "''+userSettings.dotfilesDir+''") ; import location of dotfiles directory
 '';
}
#+END_SRC
