wheel is trusted

flake.lock

@@ -359,6 +359,24 @@
       "inputs": {
         "systems": "systems_2"
       },
+      "locked": {
+        "lastModified": 1710146030,
+        "narHash": "sha256-SZ5L6eA7HJ/nmkzGG7/ISclqe6oZdOZTNoesiInkXPQ=",
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "rev": "b1d9ab70662946ef0850d488da1c9019f3a9752a",
+        "type": "github"
+      },
+      "original": {
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "type": "github"
+      }
+    },
+    "flake-utils_2": {
+      "inputs": {
+        "systems": "systems_3"
+      },
       "locked": {
         "lastModified": 1694529238,
         "narHash": "sha256-zsNZZGTGnMOf9YpHKJqMSsa0dXbfmxeoJ7xHlrt+xmY=",
@@ -373,6 +391,21 @@
         "type": "github"
       }
     },
+    "flakey-profile": {
+      "locked": {
+        "lastModified": 1712898590,
+        "narHash": "sha256-FhGIEU93VHAChKEXx905TSiPZKga69bWl1VB37FK//I=",
+        "owner": "lf-",
+        "repo": "flakey-profile",
+        "rev": "243c903fd8eadc0f63d205665a92d4df91d42d9d",
+        "type": "github"
+      },
+      "original": {
+        "owner": "lf-",
+        "repo": "flakey-profile",
+        "type": "github"
+      }
+    },
     "format-all": {
       "flake": false,
       "locked": {
@@ -747,6 +780,41 @@
         "type": "indirect"
       }
     },
+    "lix": {
+      "flake": false,
+      "locked": {
+        "lastModified": 1720626042,
+        "narHash": "sha256-f8k+BezKdJfmE+k7zgBJiohtS3VkkriycdXYsKOm3sc=",
+        "rev": "2a4376be20d70feaa2b0e640c5041fb66ddc67ed",
+        "type": "tarball",
+        "url": "https://git.lix.systems/api/v1/repos/lix-project/lix/archive/2a4376be20d70feaa2b0e640c5041fb66ddc67ed.tar.gz"
+      },
+      "original": {
+        "type": "tarball",
+        "url": "https://git.lix.systems/lix-project/lix/archive/2.90.0.tar.gz"
+      }
+    },
+    "lix-module": {
+      "inputs": {
+        "flake-utils": "flake-utils",
+        "flakey-profile": "flakey-profile",
+        "lix": "lix",
+        "nixpkgs": [
+          "nixpkgs"
+        ]
+      },
+      "locked": {
+        "lastModified": 1720641669,
+        "narHash": "sha256-yEO2cGNgzm9x/XxiDQI+WckSWnZX63R8aJLBRSXtYNE=",
+        "rev": "5c48c833c15bb80d127a398a8c2484d42fdd8257",
+        "type": "tarball",
+        "url": "https://git.lix.systems/api/v1/repos/lix-project/nixos-module/archive/5c48c833c15bb80d127a398a8c2484d42fdd8257.tar.gz"
+      },
+      "original": {
+        "type": "tarball",
+        "url": "https://git.lix.systems/lix-project/nixos-module/archive/2.90.0.tar.gz"
+      }
+    },
     "magit-file-icons": {
       "flake": false,
       "locked": {
@@ -792,7 +860,7 @@
         "evil-quick-diff": "evil-quick-diff",
         "explain-pause-mode": "explain-pause-mode",
         "flake-compat": "flake-compat",
-        "flake-utils": "flake-utils",
+        "flake-utils": "flake-utils_2",
         "format-all": "format-all",
         "nix-straight": [
           "nix-straight"
@@ -1297,6 +1365,7 @@
         "hyprland": "hyprland",
         "hyprland-plugins": "hyprland-plugins",
         "kdenlive-pin-nixpkgs": "kdenlive-pin-nixpkgs",
+        "lix-module": "lix-module",
         "magit-file-icons": "magit-file-icons",
         "mini-frame": "mini-frame",
         "nix-doom-emacs": "nix-doom-emacs",
@@ -1441,6 +1510,21 @@
         "type": "github"
       }
     },
+    "systems_3": {
+      "locked": {
+        "lastModified": 1681028828,
+        "narHash": "sha256-Vy1rq5AaRuLzOxct8nz4T6wlgyUR7zLU309k9mBC768=",
+        "owner": "nix-systems",
+        "repo": "default",
+        "rev": "da67096a3b9bf56a91d16901293e51ba5b49a27e",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nix-systems",
+        "repo": "default",
+        "type": "github"
+      }
+    },
     "ts-fold": {
       "flake": false,
       "locked": {

flake.nix

@@ -151,6 +151,7 @@
           system = systemSettings.system;
           modules = [
             (./. + "/profiles" + ("/" + systemSettings.profile) + "/configuration.nix")
+            inputs.lix-module.nixosModules.default
             ./system/bin/phoenix.nix
           ]; # load configuration.nix from selected PROFILE
           specialArgs = {
@@ -200,6 +201,10 @@
     };
 
   inputs = {
+    lix-module = {
+      url = "https://git.lix.systems/lix-project/nixos-module/archive/2.90.0.tar.gz";
+      inputs.nixpkgs.follows = "nixpkgs";
+    };
     nixpkgs.url = "nixpkgs/nixos-unstable";
     nixpkgs-stable.url = "nixpkgs/nixos-24.05";
     emacs-pin-nixpkgs.url = "nixpkgs/f72123158996b8d4449de481897d855bc47c7bf6";

profiles/work/configuration.nix

@@ -39,6 +39,9 @@
     experimental-features = nix-command flakes
   '';
 
+  # wheel group gets trusted access to nix daemon
+  nix.settings.trusted-users = [ "@wheel" ];
+
   # I'm sorry Stallman-taichou
   nixpkgs.config.allowUnfree = true;
 

sync-user.sh

@@ -6,6 +6,9 @@
 
 SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
 
+# Fix root-owned sqlite errors
+sudo chown -R 1000:users ~/.cache/nix;
+
 # Install and build home-manager configuration
 home-manager switch --flake $SCRIPT_DIR#user;
 

user/app/doom-emacs/config.el

@@ -247,6 +247,7 @@
 (setq org-attach-directory "~/Org/.attach")
 (setq org-attach-id-dir "~/Org/.attach")
 (setq org-id-locations-file "~/Org/.orgids")
+(setq org-cycle-include-plain-lists 'integrate)
 
 (remove-hook 'after-save-hook #'+literate|recompile-maybe)
 (set-company-backend! 'org-mode nil)
@@ -276,7 +277,6 @@
   `(org-agenda-date-weekend-today :inherit 'unspecified :foreground ,(nth 1 (nth 15 doom-themes--colors)) :weight bold :height 1.1)
 )
 
-
 (after! org (org-eldoc-load))
 
 (with-eval-after-load 'org (global-org-modern-mode))
@@ -691,6 +691,44 @@ If the path from LINK does not exist, nil is returned."
       "u" #'crdt-list-users
 )
 
+(require 'org-analyzer)
+(setq org-analyzer-wrapper-command "org-analyzer")
+(setq org-analyzer-jar-file-name "~/.nix-profile/bin/org-analyzer.jar")
+(setq org-analyzer-java-program "~/.nix-profile/bin/org-analyzer") ;; Is not actually java, buta  wrapper shell script
+
+(defun org-analyzer-start-process (org-dir)
+  "Start the org analyzer process .
+Argument ORG-DIR is where the org-files are located."
+  (org-analyzer-cleanup-process-state)
+  (unless (file-exists-p org-dir)
+    (warn "org-analyzer was started with org-directory set to
+  \"%s\"\nbut this directory does not exist.
+Please set the variable `org-directory' to the location where you keep your org files."
+           org-directory))
+    (let* ((name (format " *org-analyzer [org-dir:%s]*" org-dir))
+           (proc-buffer (generate-new-buffer name))
+           (proc nil))
+      (setq org-analyzer-process-buffer proc-buffer)
+      (with-current-buffer proc-buffer
+        (setq default-directory (if (file-exists-p org-dir)
+                                    org-dir default-directory)
+              proc (condition-case err
+                       (let ((process-connection-type nil)
+                             (process-environment process-environment))
+                         (start-process name
+                                        (current-buffer)
+                                        org-analyzer-wrapper-command
+                                        "--port"
+                                        (format "%d" org-analyzer-http-port)
+                                        "--started-from-emacs"
+                      (if (file-exists-p org-dir) org-dir "")))
+                     (error
+                      (concat "Can't start org-analyzer (%s: %s)"
+                (car err) (cadr err)))))
+        (set-process-query-on-exit-flag proc nil)
+        (set-process-filter proc #'org-analyzer-process-filter))
+      proc-buffer))
+
 ;;;------ Org roam configuration ------;;;
 (require 'org-roam)
 (require 'org-roam-dailies)

user/app/doom-emacs/doom.nix

@@ -58,6 +58,7 @@ in
     hledger
     hunspell hunspellDicts.en_US-large
     (pkgs-emacs.mu.override { emacs = emacs29-pgtk; })
+    (pkgs.callPackage ./pkgs/org-analyzer.nix {})
     emacsPackages.mu4e
     isync
     msmtp

user/app/doom-emacs/doom.org

@@ -317,6 +317,7 @@ Doom Emacs is traditionally installed by cloning the repository ([[https://githu
 (setq org-attach-directory "~/Org/.attach")
 (setq org-attach-id-dir "~/Org/.attach")
 (setq org-id-locations-file "~/Org/.orgids")
+(setq org-cycle-include-plain-lists 'integrate)
 
 (remove-hook 'after-save-hook #'+literate|recompile-maybe)
 (set-company-backend! 'org-mode nil)
@@ -346,7 +347,6 @@ Doom Emacs is traditionally installed by cloning the repository ([[https://githu
   `(org-agenda-date-weekend-today :inherit 'unspecified :foreground ,(nth 1 (nth 15 doom-themes--colors)) :weight bold :height 1.1)
 )
 
-
 (after! org (org-eldoc-load))
 
 (with-eval-after-load 'org (global-org-modern-mode))
@@ -824,6 +824,47 @@ exit
       "u" #'crdt-list-users
 )
 
+#+end_src
+*** Org Analyzer
+#+begin_src emacs-lisp :tangle config.el
+(require 'org-analyzer)
+(setq org-analyzer-wrapper-command "org-analyzer")
+(setq org-analyzer-jar-file-name "~/.nix-profile/bin/org-analyzer.jar")
+(setq org-analyzer-java-program "~/.nix-profile/bin/org-analyzer") ;; Is not actually java, buta  wrapper shell script
+
+(defun org-analyzer-start-process (org-dir)
+  "Start the org analyzer process .
+Argument ORG-DIR is where the org-files are located."
+  (org-analyzer-cleanup-process-state)
+  (unless (file-exists-p org-dir)
+    (warn "org-analyzer was started with org-directory set to
+  \"%s\"\nbut this directory does not exist.
+Please set the variable `org-directory' to the location where you keep your org files."
+           org-directory))
+    (let* ((name (format " *org-analyzer [org-dir:%s]*" org-dir))
+           (proc-buffer (generate-new-buffer name))
+           (proc nil))
+      (setq org-analyzer-process-buffer proc-buffer)
+      (with-current-buffer proc-buffer
+        (setq default-directory (if (file-exists-p org-dir)
+                                    org-dir default-directory)
+              proc (condition-case err
+                       (let ((process-connection-type nil)
+                             (process-environment process-environment))
+                         (start-process name
+                                        (current-buffer)
+                                        org-analyzer-wrapper-command
+                                        "--port"
+                                        (format "%d" org-analyzer-http-port)
+                                        "--started-from-emacs"
+                      (if (file-exists-p org-dir) org-dir "")))
+                     (error
+                      (concat "Can't start org-analyzer (%s: %s)"
+                (car err) (cadr err)))))
+        (set-process-query-on-exit-flag proc nil)
+        (set-process-filter proc #'org-analyzer-process-filter))
+      proc-buffer))
+
 #+end_src
 ** Org Roam Configuration
 *** Standard Org Roam Configuration
@@ -2083,6 +2124,7 @@ Any git package can be configured for a particular commit or branch:
 - =(unpin! pinned-package another-pinned-package)= to get bleeding edge instead of Doom's stability
 
 #+BEGIN_SRC emacs-lisp :tangle packages.el
+(package! org-analyzer :pin "0908eea")
 (package! embark :pin "0908eea")
 (package! dashboard)
 (package! direnv)
@@ -2183,6 +2225,7 @@ in
     hledger
     hunspell hunspellDicts.en_US-large
     (pkgs-emacs.mu.override { emacs = emacs29-pgtk; })
+    (pkgs.callPackage ./pkgs/org-analyzer.nix {})
     emacsPackages.mu4e
     isync
     msmtp

user/app/doom-emacs/packages.el

@@ -1,3 +1,4 @@
+(package! org-analyzer :pin "0908eea")
 (package! embark :pin "0908eea")
 (package! dashboard)
 (package! direnv)

user/app/doom-emacs/pkgs/org-analyzer.nix

@@ -0,0 +1,24 @@
+{ stdenv, fetchFromGitHub, pkgs, ... }:
+let name = "clj-org-analyzer";
+    version = "1.0.2";
+in stdenv.mkDerivation
+{
+  inherit name version;
+
+  src = builtins.fetchurl {
+    url = "https://github.com/rksm/clj-org-analyzer/releases/download/1.0.2/org-analyzer-1.0.2.jar";
+    sha256 = "sha256:1j5c688yg6f5y6n86rf6vkwd1csn1y4dc716d5bczmyr2sgi9c67";
+  };
+
+  dontUnpack = true;
+
+  installPhase = ''
+    mkdir $out $out/bin;
+    cp $src $out/bin/org-analyzer.jar;
+    echo "#!/bin/sh
+         ${pkgs.jdk}/bin/java -jar $out/bin/org-analyzer.jar $@" > $out/bin/org-analyzer
+    chmod +x $out/bin/org-analyzer.jar
+    chmod +x $out/bin/org-analyzer
+  '';
+
+}